Hb_003368_130

Information

Type -
Description -
Location Contig3368: 183405-188072
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003368_130 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000215_170 0.2040069873 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
3 Hb_000389_070 0.308569076 - - -
4 Hb_000317_300 0.3195200288 - - -
5 Hb_019093_010 0.3408737406 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
6 Hb_000069_680 0.3408920601 - - -
7 Hb_006775_010 0.3412286338 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
8 Hb_000212_220 0.3414007355 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_000350_110 0.343972763 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
10 Hb_005109_030 0.3440289096 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
11 Hb_036609_010 0.3457531312 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
12 Hb_001422_040 0.3501852376 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
13 Hb_018264_010 0.3503037097 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
14 Hb_149181_020 0.3504193425 - - -
15 Hb_003878_040 0.3518640619 - - -
16 Hb_004208_110 0.3537087584 - - -
17 Hb_007122_030 0.3537382121 - - -
18 Hb_086639_060 0.354290273 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
19 Hb_136367_010 0.3560131655 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
20 Hb_000232_050 0.3584060947 - - -

Gene co-expression network

sample Hb_003368_130 Hb_003368_130 Hb_000215_170 Hb_000215_170 Hb_003368_130--Hb_000215_170 Hb_000389_070 Hb_000389_070 Hb_003368_130--Hb_000389_070 Hb_000317_300 Hb_000317_300 Hb_003368_130--Hb_000317_300 Hb_019093_010 Hb_019093_010 Hb_003368_130--Hb_019093_010 Hb_000069_680 Hb_000069_680 Hb_003368_130--Hb_000069_680 Hb_006775_010 Hb_006775_010 Hb_003368_130--Hb_006775_010 Hb_003918_040 Hb_003918_040 Hb_000215_170--Hb_003918_040 Hb_005183_160 Hb_005183_160 Hb_000215_170--Hb_005183_160 Hb_004304_050 Hb_004304_050 Hb_000215_170--Hb_004304_050 Hb_008880_010 Hb_008880_010 Hb_000215_170--Hb_008880_010 Hb_061390_010 Hb_061390_010 Hb_000215_170--Hb_061390_010 Hb_000671_180 Hb_000671_180 Hb_000389_070--Hb_000671_180 Hb_000389_070--Hb_000215_170 Hb_004903_010 Hb_004903_010 Hb_000389_070--Hb_004903_010 Hb_171276_010 Hb_171276_010 Hb_000389_070--Hb_171276_010 Hb_000174_010 Hb_000174_010 Hb_000389_070--Hb_000174_010 Hb_029920_040 Hb_029920_040 Hb_000317_300--Hb_029920_040 Hb_011640_030 Hb_011640_030 Hb_000317_300--Hb_011640_030 Hb_000098_320 Hb_000098_320 Hb_000317_300--Hb_000098_320 Hb_004157_120 Hb_004157_120 Hb_000317_300--Hb_004157_120 Hb_000912_020 Hb_000912_020 Hb_000317_300--Hb_000912_020 Hb_019093_010--Hb_000069_680 Hb_019093_010--Hb_006775_010 Hb_000212_220 Hb_000212_220 Hb_019093_010--Hb_000212_220 Hb_005109_030 Hb_005109_030 Hb_019093_010--Hb_005109_030 Hb_036609_010 Hb_036609_010 Hb_019093_010--Hb_036609_010 Hb_001422_040 Hb_001422_040 Hb_019093_010--Hb_001422_040 Hb_000069_680--Hb_006775_010 Hb_000069_680--Hb_000212_220 Hb_000069_680--Hb_005109_030 Hb_000069_680--Hb_036609_010 Hb_000069_680--Hb_001422_040 Hb_006775_010--Hb_000212_220 Hb_006775_010--Hb_005109_030 Hb_006775_010--Hb_036609_010 Hb_006775_010--Hb_001422_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00499498 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.011309 0 0 0.00705121 0

CAGE analysis