Hb_000671_180

Information

Type -
Description -
Location Contig671: 243615-252331
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAG51486.1
description RING zinc finger protein, putative [Arabidopsis thaliana]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005488
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_180 0.0 - - RING zinc finger protein, putative [Arabidopsis thaliana]
2 Hb_000389_070 0.1858273476 - - -
3 Hb_004903_010 0.3035592493 - - -
4 Hb_019863_020 0.3283131678 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
5 Hb_070268_010 0.3294832324 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_006775_050 0.3384991895 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
7 Hb_000179_160 0.3588889298 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
8 Hb_007218_030 0.365272239 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
9 Hb_002299_020 0.3690877751 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009486_110 0.3734947607 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
11 Hb_027450_020 0.3743142701 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
12 Hb_079459_010 0.3794754726 - - conserved hypothetical protein [Ricinus communis]
13 Hb_171276_010 0.3962466696 - - -
14 Hb_000174_010 0.4003861685 - - PREDICTED: uncharacterized protein LOC103444904 [Malus domestica]
15 Hb_001112_020 0.404527761 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
16 Hb_000574_500 0.4197300348 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
17 Hb_014175_010 0.4233724024 - - Uncharacterized protein TCM_033221 [Theobroma cacao]
18 Hb_003368_130 0.4266605567 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_006120_090 0.4290638527 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
20 Hb_002855_020 0.431100455 - - -

Gene co-expression network

sample Hb_000671_180 Hb_000671_180 Hb_000389_070 Hb_000389_070 Hb_000671_180--Hb_000389_070 Hb_004903_010 Hb_004903_010 Hb_000671_180--Hb_004903_010 Hb_019863_020 Hb_019863_020 Hb_000671_180--Hb_019863_020 Hb_070268_010 Hb_070268_010 Hb_000671_180--Hb_070268_010 Hb_006775_050 Hb_006775_050 Hb_000671_180--Hb_006775_050 Hb_000179_160 Hb_000179_160 Hb_000671_180--Hb_000179_160 Hb_003368_130 Hb_003368_130 Hb_000389_070--Hb_003368_130 Hb_000215_170 Hb_000215_170 Hb_000389_070--Hb_000215_170 Hb_000389_070--Hb_004903_010 Hb_171276_010 Hb_171276_010 Hb_000389_070--Hb_171276_010 Hb_000174_010 Hb_000174_010 Hb_000389_070--Hb_000174_010 Hb_034454_020 Hb_034454_020 Hb_004903_010--Hb_034454_020 Hb_049901_010 Hb_049901_010 Hb_004903_010--Hb_049901_010 Hb_007218_030 Hb_007218_030 Hb_004903_010--Hb_007218_030 Hb_004903_010--Hb_000179_160 Hb_000425_050 Hb_000425_050 Hb_004903_010--Hb_000425_050 Hb_009563_020 Hb_009563_020 Hb_004903_010--Hb_009563_020 Hb_019863_020--Hb_006775_050 Hb_019863_020--Hb_070268_010 Hb_009486_110 Hb_009486_110 Hb_019863_020--Hb_009486_110 Hb_027450_020 Hb_027450_020 Hb_019863_020--Hb_027450_020 Hb_019863_020--Hb_000179_160 Hb_019863_020--Hb_007218_030 Hb_070268_010--Hb_000179_160 Hb_070268_010--Hb_007218_030 Hb_070268_010--Hb_006775_050 Hb_070268_010--Hb_009486_110 Hb_070268_010--Hb_027450_020 Hb_006775_050--Hb_009486_110 Hb_006775_050--Hb_027450_020 Hb_054581_010 Hb_054581_010 Hb_006775_050--Hb_054581_010 Hb_006775_050--Hb_000179_160 Hb_000179_160--Hb_007218_030 Hb_000574_500 Hb_000574_500 Hb_000179_160--Hb_000574_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0629202 0.0199369 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1364 0 0 0.0287056 0

CAGE analysis