Hb_000264_050

Information

Type -
Description -
Location Contig264: 24071-25423
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04750g
description POPTRDRAFT_890037; hypothetical protein
nr
ID XP_002316629.2
description hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
swissprot
ID P0C8Q4
description Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1
trembl
ID B9HYL1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s04750g PE=4 SV=2
Gene Ontology
ID GO:0050512
description lactosylceramide 4-alpha-galactosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27585: 24545-25063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_050 0.0 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
2 Hb_000395_250 0.1576774195 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
3 Hb_116349_020 0.1585589312 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
4 Hb_004899_190 0.1663787315 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
5 Hb_003632_020 0.1665240133 - - calcium-binding family protein [Populus trichocarpa]
6 Hb_188063_040 0.1667810161 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
7 Hb_004586_270 0.1686562376 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
8 Hb_010326_020 0.1691401115 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
9 Hb_000979_120 0.1709709091 - - Pectinesterase-1 precursor, putative [Ricinus communis]
10 Hb_003020_120 0.1726745511 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
11 Hb_000987_030 0.1749807805 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
12 Hb_004452_070 0.175616717 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
13 Hb_000511_030 0.1757356322 - - PREDICTED: uncharacterized protein LOC105636463 [Jatropha curcas]
14 Hb_000251_150 0.1757686542 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
15 Hb_005743_050 0.1770184068 - - unnamed protein product [Coffea canephora]
16 Hb_029879_020 0.1776741787 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
17 Hb_002071_030 0.1788514055 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
18 Hb_169383_010 0.1789558817 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
19 Hb_027380_080 0.17904009 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
20 Hb_158001_010 0.1790433176 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]

Gene co-expression network

sample Hb_000264_050 Hb_000264_050 Hb_000395_250 Hb_000395_250 Hb_000264_050--Hb_000395_250 Hb_116349_020 Hb_116349_020 Hb_000264_050--Hb_116349_020 Hb_004899_190 Hb_004899_190 Hb_000264_050--Hb_004899_190 Hb_003632_020 Hb_003632_020 Hb_000264_050--Hb_003632_020 Hb_188063_040 Hb_188063_040 Hb_000264_050--Hb_188063_040 Hb_004586_270 Hb_004586_270 Hb_000264_050--Hb_004586_270 Hb_000392_470 Hb_000392_470 Hb_000395_250--Hb_000392_470 Hb_004128_170 Hb_004128_170 Hb_000395_250--Hb_004128_170 Hb_002042_210 Hb_002042_210 Hb_000395_250--Hb_002042_210 Hb_006291_050 Hb_006291_050 Hb_000395_250--Hb_006291_050 Hb_000099_120 Hb_000099_120 Hb_000395_250--Hb_000099_120 Hb_044478_010 Hb_044478_010 Hb_000395_250--Hb_044478_010 Hb_001307_050 Hb_001307_050 Hb_116349_020--Hb_001307_050 Hb_000179_010 Hb_000179_010 Hb_116349_020--Hb_000179_010 Hb_029991_010 Hb_029991_010 Hb_116349_020--Hb_029991_010 Hb_004837_010 Hb_004837_010 Hb_116349_020--Hb_004837_010 Hb_000497_050 Hb_000497_050 Hb_116349_020--Hb_000497_050 Hb_146255_030 Hb_146255_030 Hb_116349_020--Hb_146255_030 Hb_000703_340 Hb_000703_340 Hb_004899_190--Hb_000703_340 Hb_004452_070 Hb_004452_070 Hb_004899_190--Hb_004452_070 Hb_003020_120 Hb_003020_120 Hb_004899_190--Hb_003020_120 Hb_000979_120 Hb_000979_120 Hb_004899_190--Hb_000979_120 Hb_013405_110 Hb_013405_110 Hb_004899_190--Hb_013405_110 Hb_001936_100 Hb_001936_100 Hb_004899_190--Hb_001936_100 Hb_010326_020 Hb_010326_020 Hb_003632_020--Hb_010326_020 Hb_011724_040 Hb_011724_040 Hb_003632_020--Hb_011724_040 Hb_002121_050 Hb_002121_050 Hb_003632_020--Hb_002121_050 Hb_002375_030 Hb_002375_030 Hb_003632_020--Hb_002375_030 Hb_001277_350 Hb_001277_350 Hb_003632_020--Hb_001277_350 Hb_008195_070 Hb_008195_070 Hb_003632_020--Hb_008195_070 Hb_003528_100 Hb_003528_100 Hb_188063_040--Hb_003528_100 Hb_046825_010 Hb_046825_010 Hb_188063_040--Hb_046825_010 Hb_000160_120 Hb_000160_120 Hb_188063_040--Hb_000160_120 Hb_000363_070 Hb_000363_070 Hb_188063_040--Hb_000363_070 Hb_000268_050 Hb_000268_050 Hb_188063_040--Hb_000268_050 Hb_065774_010 Hb_065774_010 Hb_188063_040--Hb_065774_010 Hb_008112_020 Hb_008112_020 Hb_004586_270--Hb_008112_020 Hb_000227_100 Hb_000227_100 Hb_004586_270--Hb_000227_100 Hb_169383_010 Hb_169383_010 Hb_004586_270--Hb_169383_010 Hb_001195_290 Hb_001195_290 Hb_004586_270--Hb_001195_290 Hb_003090_240 Hb_003090_240 Hb_004586_270--Hb_003090_240 Hb_006472_040 Hb_006472_040 Hb_004586_270--Hb_006472_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019212 0 0.27346 0.194713 0 0.015766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0352005 0 0 0 0.634321

CAGE analysis