Hb_000077_440

Information

Type -
Description -
Location Contig77: 327581-332155
Sequence    

Annotation

kegg
ID vvi:100267122
description ELMO domain-containing protein A
nr
ID XP_012088318.1
description PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
swissprot
ID Q499U2
description Engulfment and cell motility protein 3 OS=Rattus norvegicus GN=Elmo3 PE=2 SV=1
trembl
ID A0A067ECB9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048536mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57630: 330945-332115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_440 0.0 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
2 Hb_002518_200 0.1442744641 - - Proliferating cell nuclear antigen [Theobroma cacao]
3 Hb_000692_210 0.1514449813 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
4 Hb_023226_030 0.1528575838 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
5 Hb_148346_010 0.1732247176 - - -
6 Hb_000934_150 0.1803998266 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
7 Hb_004920_050 0.1839629575 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
8 Hb_000917_240 0.1848811999 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
9 Hb_006831_080 0.1852618544 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
10 Hb_000003_740 0.1860677367 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
11 Hb_011457_130 0.1878054959 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
12 Hb_003430_080 0.1883598105 - - zinc finger protein, putative [Ricinus communis]
13 Hb_006483_060 0.1887286255 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
14 Hb_001619_100 0.1915815436 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
15 Hb_005694_180 0.1974018061 - - PREDICTED: cytochrome b5 [Jatropha curcas]
16 Hb_001195_420 0.1978193667 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
17 Hb_000181_270 0.1985613058 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000529_040 0.2016043569 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
19 Hb_011485_030 0.2020947925 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
20 Hb_080147_020 0.2043173171 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000077_440 Hb_000077_440 Hb_002518_200 Hb_002518_200 Hb_000077_440--Hb_002518_200 Hb_000692_210 Hb_000692_210 Hb_000077_440--Hb_000692_210 Hb_023226_030 Hb_023226_030 Hb_000077_440--Hb_023226_030 Hb_148346_010 Hb_148346_010 Hb_000077_440--Hb_148346_010 Hb_000934_150 Hb_000934_150 Hb_000077_440--Hb_000934_150 Hb_004920_050 Hb_004920_050 Hb_000077_440--Hb_004920_050 Hb_002518_200--Hb_000692_210 Hb_000181_270 Hb_000181_270 Hb_002518_200--Hb_000181_270 Hb_002518_200--Hb_004920_050 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030 Hb_004837_220 Hb_004837_220 Hb_000692_210--Hb_004837_220 Hb_003747_050 Hb_003747_050 Hb_000692_210--Hb_003747_050 Hb_000692_210--Hb_000003_740 Hb_005000_140 Hb_005000_140 Hb_000692_210--Hb_005000_140 Hb_080147_020 Hb_080147_020 Hb_000692_210--Hb_080147_020 Hb_034507_060 Hb_034507_060 Hb_023226_030--Hb_034507_060 Hb_003430_080 Hb_003430_080 Hb_023226_030--Hb_003430_080 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_002539_050 Hb_002539_050 Hb_148346_010--Hb_002539_050 Hb_004678_030 Hb_004678_030 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_010315_100 Hb_010315_100 Hb_148346_010--Hb_010315_100 Hb_148346_010--Hb_000003_740 Hb_001882_150 Hb_001882_150 Hb_148346_010--Hb_001882_150 Hb_000307_220 Hb_000307_220 Hb_000934_150--Hb_000307_220 Hb_002518_090 Hb_002518_090 Hb_000934_150--Hb_002518_090 Hb_006970_130 Hb_006970_130 Hb_000934_150--Hb_006970_130 Hb_003580_010 Hb_003580_010 Hb_000934_150--Hb_003580_010 Hb_000934_150--Hb_023226_030 Hb_001080_050 Hb_001080_050 Hb_000934_150--Hb_001080_050 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_000890_020 Hb_000890_020 Hb_004920_050--Hb_000890_020 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.349394 0.630951 1.25197 1.08844 0.0792916 0.0697364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120932 0.0950988 0 0.61421 0.0962031

CAGE analysis