Hb_185092_010

Information

Type -
Description -
Location Contig185092: 70-1243
Sequence    

Annotation

kegg
ID rcu:RCOM_0497320
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID XP_002527854.1
description DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
swissprot
ID B1Q3J6
description DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B PE=2 SV=1
trembl
ID B9SPD5
description Cytosine-specific methyltransferase OS=Ricinus communis GN=RCOM_0497320 PE=3 SV=1
Gene Ontology
ID GO:0005488
description dna (cytosine-5)-methyltransferase 1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185092_010 0.0 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
2 Hb_002735_020 0.3092403682 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_183612_030 0.3141779354 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
4 Hb_159921_010 0.3376937442 - - -
5 Hb_002666_020 0.3397237772 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
6 Hb_035398_010 0.3415596144 - - hypothetical protein JCGZ_13029 [Jatropha curcas]
7 Hb_001008_040 0.3506794686 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
8 Hb_015026_150 0.364946492 - - Nuclease PA3, putative [Ricinus communis]
9 Hb_008225_070 0.3662748547 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_017462_010 0.3693270773 - - -
11 Hb_000832_210 0.3700219361 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
12 Hb_175069_010 0.3715085902 - - hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]
13 Hb_075964_010 0.3778167747 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
14 Hb_000740_120 0.3778184077 - - -
15 Hb_003952_140 0.3795511163 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
16 Hb_002046_030 0.3795627484 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
17 Hb_002686_380 0.3809236998 - - -
18 Hb_000098_300 0.381030648 - - -
19 Hb_004883_060 0.3811230511 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
20 Hb_074979_010 0.3813331846 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]

Gene co-expression network

sample Hb_185092_010 Hb_185092_010 Hb_002735_020 Hb_002735_020 Hb_185092_010--Hb_002735_020 Hb_183612_030 Hb_183612_030 Hb_185092_010--Hb_183612_030 Hb_159921_010 Hb_159921_010 Hb_185092_010--Hb_159921_010 Hb_002666_020 Hb_002666_020 Hb_185092_010--Hb_002666_020 Hb_035398_010 Hb_035398_010 Hb_185092_010--Hb_035398_010 Hb_001008_040 Hb_001008_040 Hb_185092_010--Hb_001008_040 Hb_002735_020--Hb_183612_030 Hb_003321_020 Hb_003321_020 Hb_002735_020--Hb_003321_020 Hb_000463_110 Hb_000463_110 Hb_002735_020--Hb_000463_110 Hb_002686_370 Hb_002686_370 Hb_002735_020--Hb_002686_370 Hb_092416_010 Hb_092416_010 Hb_002735_020--Hb_092416_010 Hb_002260_230 Hb_002260_230 Hb_002735_020--Hb_002260_230 Hb_183612_030--Hb_003321_020 Hb_013429_020 Hb_013429_020 Hb_183612_030--Hb_013429_020 Hb_003117_040 Hb_003117_040 Hb_183612_030--Hb_003117_040 Hb_020580_010 Hb_020580_010 Hb_183612_030--Hb_020580_010 Hb_032299_060 Hb_032299_060 Hb_183612_030--Hb_032299_060 Hb_000853_400 Hb_000853_400 Hb_159921_010--Hb_000853_400 Hb_159921_010--Hb_001008_040 Hb_000432_060 Hb_000432_060 Hb_159921_010--Hb_000432_060 Hb_122408_010 Hb_122408_010 Hb_159921_010--Hb_122408_010 Hb_003327_040 Hb_003327_040 Hb_159921_010--Hb_003327_040 Hb_159921_010--Hb_002666_020 Hb_000733_210 Hb_000733_210 Hb_002666_020--Hb_000733_210 Hb_002666_020--Hb_000853_400 Hb_001636_020 Hb_001636_020 Hb_002666_020--Hb_001636_020 Hb_004724_120 Hb_004724_120 Hb_002666_020--Hb_004724_120 Hb_000544_050 Hb_000544_050 Hb_002666_020--Hb_000544_050 Hb_000193_140 Hb_000193_140 Hb_002666_020--Hb_000193_140 Hb_083820_010 Hb_083820_010 Hb_035398_010--Hb_083820_010 Hb_077054_010 Hb_077054_010 Hb_035398_010--Hb_077054_010 Hb_043485_010 Hb_043485_010 Hb_035398_010--Hb_043485_010 Hb_141918_010 Hb_141918_010 Hb_035398_010--Hb_141918_010 Hb_001016_110 Hb_001016_110 Hb_035398_010--Hb_001016_110 Hb_081745_010 Hb_081745_010 Hb_035398_010--Hb_081745_010 Hb_003609_020 Hb_003609_020 Hb_001008_040--Hb_003609_020 Hb_008225_070 Hb_008225_070 Hb_001008_040--Hb_008225_070 Hb_000045_150 Hb_000045_150 Hb_001008_040--Hb_000045_150 Hb_000500_140 Hb_000500_140 Hb_001008_040--Hb_000500_140 Hb_001008_040--Hb_000733_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0945719 0 0.0698732 0 0.396885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.101444 0.172679 0.252489 0

CAGE analysis