Hb_035398_010

Information

Type -
Description -
Location Contig35398: 46-865
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15300g
description hypothetical protein
nr
ID KDP32998.1
description hypothetical protein JCGZ_13029 [Jatropha curcas]
swissprot
ID Q5BQ05
description Uncharacterized protein At1g18380 OS=Arabidopsis thaliana GN=At1g18380 PE=2 SV=1
trembl
ID A0A067KD93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13029 PE=4 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035398_010 0.0 - - hypothetical protein JCGZ_13029 [Jatropha curcas]
2 Hb_083820_010 0.2074381201 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_077054_010 0.2294033254 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_043485_010 0.2517740892 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
5 Hb_141918_010 0.2552461168 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
6 Hb_001016_110 0.2570562923 desease resistance Gene Name: Lectin_legB hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
7 Hb_081745_010 0.2579586511 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
8 Hb_062007_010 0.2584449569 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
9 Hb_000009_180 0.2603138285 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
10 Hb_137461_010 0.2604626136 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
11 Hb_000777_030 0.2630651535 - - histone h2a, putative [Ricinus communis]
12 Hb_001183_010 0.2716126587 - - -
13 Hb_022400_010 0.2721673396 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
14 Hb_084481_010 0.2734796776 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
15 Hb_000575_150 0.2761694922 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
16 Hb_010727_010 0.2767384614 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
17 Hb_032278_030 0.2781840331 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_087596_010 0.2796613383 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
19 Hb_146109_010 0.2826082401 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005052_020 0.2826168225 - - -

Gene co-expression network

sample Hb_035398_010 Hb_035398_010 Hb_083820_010 Hb_083820_010 Hb_035398_010--Hb_083820_010 Hb_077054_010 Hb_077054_010 Hb_035398_010--Hb_077054_010 Hb_043485_010 Hb_043485_010 Hb_035398_010--Hb_043485_010 Hb_141918_010 Hb_141918_010 Hb_035398_010--Hb_141918_010 Hb_001016_110 Hb_001016_110 Hb_035398_010--Hb_001016_110 Hb_081745_010 Hb_081745_010 Hb_035398_010--Hb_081745_010 Hb_083820_010--Hb_043485_010 Hb_002311_340 Hb_002311_340 Hb_083820_010--Hb_002311_340 Hb_004449_080 Hb_004449_080 Hb_083820_010--Hb_004449_080 Hb_002005_100 Hb_002005_100 Hb_083820_010--Hb_002005_100 Hb_002713_010 Hb_002713_010 Hb_083820_010--Hb_002713_010 Hb_000009_180 Hb_000009_180 Hb_083820_010--Hb_000009_180 Hb_010727_010 Hb_010727_010 Hb_077054_010--Hb_010727_010 Hb_077054_010--Hb_081745_010 Hb_077054_010--Hb_001016_110 Hb_000025_340 Hb_000025_340 Hb_077054_010--Hb_000025_340 Hb_087596_010 Hb_087596_010 Hb_077054_010--Hb_087596_010 Hb_073395_010 Hb_073395_010 Hb_077054_010--Hb_073395_010 Hb_108329_020 Hb_108329_020 Hb_043485_010--Hb_108329_020 Hb_001486_030 Hb_001486_030 Hb_043485_010--Hb_001486_030 Hb_015690_010 Hb_015690_010 Hb_043485_010--Hb_015690_010 Hb_001246_030 Hb_001246_030 Hb_043485_010--Hb_001246_030 Hb_008147_070 Hb_008147_070 Hb_043485_010--Hb_008147_070 Hb_010487_020 Hb_010487_020 Hb_141918_010--Hb_010487_020 Hb_141918_010--Hb_010727_010 Hb_003060_090 Hb_003060_090 Hb_141918_010--Hb_003060_090 Hb_000905_170 Hb_000905_170 Hb_141918_010--Hb_000905_170 Hb_001123_290 Hb_001123_290 Hb_141918_010--Hb_001123_290 Hb_000227_060 Hb_000227_060 Hb_141918_010--Hb_000227_060 Hb_004705_140 Hb_004705_140 Hb_001016_110--Hb_004705_140 Hb_000009_570 Hb_000009_570 Hb_001016_110--Hb_000009_570 Hb_000016_100 Hb_000016_100 Hb_001016_110--Hb_000016_100 Hb_009838_050 Hb_009838_050 Hb_001016_110--Hb_009838_050 Hb_001016_110--Hb_000227_060 Hb_001514_130 Hb_001514_130 Hb_001016_110--Hb_001514_130 Hb_081745_010--Hb_010727_010 Hb_001183_010 Hb_001183_010 Hb_081745_010--Hb_001183_010 Hb_081745_010--Hb_141918_010 Hb_002234_190 Hb_002234_190 Hb_081745_010--Hb_002234_190 Hb_081745_010--Hb_073395_010 Hb_164945_040 Hb_164945_040 Hb_081745_010--Hb_164945_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0640865 0.388614 0 0.0583539 0 0.475935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147712 0.290337 0.208712 0.400546 0.115741

CAGE analysis