Hb_176894_010

Information

Type -
Description -
Location Contig176894: 206-535
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176894_010 0.0 - - -
2 Hb_018691_020 0.1903160932 - - -
3 Hb_178793_010 0.1970983969 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
4 Hb_105660_010 0.1996951119 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
5 Hb_007163_040 0.2025503605 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
6 Hb_002027_170 0.2153117184 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
7 Hb_006185_010 0.2180073772 - - hypothetical protein L484_013453 [Morus notabilis]
8 Hb_006550_010 0.2181013412 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
9 Hb_000692_230 0.218308784 - - phospholipase d delta, putative [Ricinus communis]
10 Hb_004032_250 0.2187522108 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005656_160 0.221023806 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
12 Hb_001818_060 0.2230942383 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
13 Hb_000056_350 0.2237941659 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
14 Hb_000429_110 0.227432031 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
15 Hb_055531_010 0.2290736456 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
16 Hb_006938_040 0.2295570216 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
17 Hb_002571_070 0.2307731567 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
18 Hb_000056_080 0.2311880942 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
19 Hb_001329_270 0.2323912411 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
20 Hb_006935_010 0.232699567 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_176894_010 Hb_176894_010 Hb_018691_020 Hb_018691_020 Hb_176894_010--Hb_018691_020 Hb_178793_010 Hb_178793_010 Hb_176894_010--Hb_178793_010 Hb_105660_010 Hb_105660_010 Hb_176894_010--Hb_105660_010 Hb_007163_040 Hb_007163_040 Hb_176894_010--Hb_007163_040 Hb_002027_170 Hb_002027_170 Hb_176894_010--Hb_002027_170 Hb_006185_010 Hb_006185_010 Hb_176894_010--Hb_006185_010 Hb_028487_130 Hb_028487_130 Hb_018691_020--Hb_028487_130 Hb_018691_020--Hb_178793_010 Hb_001255_010 Hb_001255_010 Hb_018691_020--Hb_001255_010 Hb_007136_010 Hb_007136_010 Hb_018691_020--Hb_007136_010 Hb_053519_010 Hb_053519_010 Hb_018691_020--Hb_053519_010 Hb_001518_060 Hb_001518_060 Hb_018691_020--Hb_001518_060 Hb_178793_010--Hb_028487_130 Hb_002849_070 Hb_002849_070 Hb_178793_010--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_178793_010--Hb_000200_170 Hb_005000_050 Hb_005000_050 Hb_178793_010--Hb_005000_050 Hb_000920_220 Hb_000920_220 Hb_178793_010--Hb_000920_220 Hb_020967_010 Hb_020967_010 Hb_105660_010--Hb_020967_010 Hb_004453_180 Hb_004453_180 Hb_105660_010--Hb_004453_180 Hb_001357_030 Hb_001357_030 Hb_105660_010--Hb_001357_030 Hb_186647_010 Hb_186647_010 Hb_105660_010--Hb_186647_010 Hb_000172_050 Hb_000172_050 Hb_105660_010--Hb_000172_050 Hb_006550_010 Hb_006550_010 Hb_105660_010--Hb_006550_010 Hb_006938_040 Hb_006938_040 Hb_007163_040--Hb_006938_040 Hb_007163_040--Hb_002027_170 Hb_000540_040 Hb_000540_040 Hb_007163_040--Hb_000540_040 Hb_002571_070 Hb_002571_070 Hb_007163_040--Hb_002571_070 Hb_004126_030 Hb_004126_030 Hb_007163_040--Hb_004126_030 Hb_001439_250 Hb_001439_250 Hb_007163_040--Hb_001439_250 Hb_001049_160 Hb_001049_160 Hb_002027_170--Hb_001049_160 Hb_005054_170 Hb_005054_170 Hb_002027_170--Hb_005054_170 Hb_000056_280 Hb_000056_280 Hb_002027_170--Hb_000056_280 Hb_001318_140 Hb_001318_140 Hb_002027_170--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_002027_170--Hb_065525_010 Hb_000836_600 Hb_000836_600 Hb_002027_170--Hb_000836_600 Hb_000342_140 Hb_000342_140 Hb_006185_010--Hb_000342_140 Hb_001818_060 Hb_001818_060 Hb_006185_010--Hb_001818_060 Hb_006185_010--Hb_000836_600 Hb_001133_010 Hb_001133_010 Hb_006185_010--Hb_001133_010 Hb_138585_100 Hb_138585_100 Hb_006185_010--Hb_138585_100 Hb_103788_010 Hb_103788_010 Hb_006185_010--Hb_103788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.44287 0.525451 2.76624 0.381454 0.116347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297835 0.468418 0 0.848652 0.380495

CAGE analysis