Hb_004453_180

Information

Type -
Description -
Location Contig4453: 117826-124344
Sequence    

Annotation

kegg
ID rcu:RCOM_1053900
description Potassium channel AKT6, putative
nr
ID KDP33617.1
description hypothetical protein JCGZ_07188 [Jatropha curcas]
swissprot
ID Q38998
description Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2
trembl
ID A0A067KBU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07188 PE=4 SV=1
Gene Ontology
ID GO:0005242
description potassium channel akt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42992: 117831-118855 , PASA_asmbl_42993: 118966-122884 , PASA_asmbl_42994: 118966-121907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_180 0.0 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
2 Hb_105660_010 0.1639224384 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
3 Hb_020967_010 0.1669884189 - - -
4 Hb_103788_010 0.1787973135 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_012760_060 0.1948284474 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
6 Hb_003637_020 0.2007209895 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000270_770 0.2016032697 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
8 Hb_006185_010 0.2023358841 - - hypothetical protein L484_013453 [Morus notabilis]
9 Hb_006550_010 0.2040909623 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
10 Hb_000342_140 0.2044034907 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
11 Hb_000336_190 0.2046231904 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
12 Hb_001355_070 0.2056648269 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
13 Hb_001357_030 0.2072092595 - - hypothetical protein F383_04880 [Gossypium arboreum]
14 Hb_001195_500 0.2089020684 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
15 Hb_053519_010 0.2093942904 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
16 Hb_000172_050 0.2100358113 - - PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]
17 Hb_000003_430 0.215501765 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_000856_050 0.2157559263 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
19 Hb_002918_150 0.2166743697 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
20 Hb_006925_070 0.217367521 - - hypothetical protein JCGZ_20652 [Jatropha curcas]

Gene co-expression network

sample Hb_004453_180 Hb_004453_180 Hb_105660_010 Hb_105660_010 Hb_004453_180--Hb_105660_010 Hb_020967_010 Hb_020967_010 Hb_004453_180--Hb_020967_010 Hb_103788_010 Hb_103788_010 Hb_004453_180--Hb_103788_010 Hb_012760_060 Hb_012760_060 Hb_004453_180--Hb_012760_060 Hb_003637_020 Hb_003637_020 Hb_004453_180--Hb_003637_020 Hb_000270_770 Hb_000270_770 Hb_004453_180--Hb_000270_770 Hb_105660_010--Hb_020967_010 Hb_001357_030 Hb_001357_030 Hb_105660_010--Hb_001357_030 Hb_186647_010 Hb_186647_010 Hb_105660_010--Hb_186647_010 Hb_000172_050 Hb_000172_050 Hb_105660_010--Hb_000172_050 Hb_006550_010 Hb_006550_010 Hb_105660_010--Hb_006550_010 Hb_053519_010 Hb_053519_010 Hb_020967_010--Hb_053519_010 Hb_000336_190 Hb_000336_190 Hb_020967_010--Hb_000336_190 Hb_001472_140 Hb_001472_140 Hb_020967_010--Hb_001472_140 Hb_000003_760 Hb_000003_760 Hb_020967_010--Hb_000003_760 Hb_003531_040 Hb_003531_040 Hb_020967_010--Hb_003531_040 Hb_103788_010--Hb_003637_020 Hb_003752_120 Hb_003752_120 Hb_103788_010--Hb_003752_120 Hb_002915_070 Hb_002915_070 Hb_103788_010--Hb_002915_070 Hb_185513_010 Hb_185513_010 Hb_103788_010--Hb_185513_010 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080 Hb_000506_130 Hb_000506_130 Hb_012760_060--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_012760_060--Hb_052113_020 Hb_000431_030 Hb_000431_030 Hb_012760_060--Hb_000431_030 Hb_017434_020 Hb_017434_020 Hb_012760_060--Hb_017434_020 Hb_024357_010 Hb_024357_010 Hb_012760_060--Hb_024357_010 Hb_115158_010 Hb_115158_010 Hb_012760_060--Hb_115158_010 Hb_003637_020--Hb_185513_010 Hb_000117_060 Hb_000117_060 Hb_003637_020--Hb_000117_060 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020 Hb_000003_430 Hb_000003_430 Hb_000270_770--Hb_000003_430 Hb_001956_190 Hb_001956_190 Hb_000270_770--Hb_001956_190 Hb_000270_770--Hb_103788_010 Hb_000270_770--Hb_185513_010 Hb_006711_070 Hb_006711_070 Hb_000270_770--Hb_006711_070 Hb_000270_770--Hb_003637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.479315 8.24604 1.13605 6.40872 1.01015 0.675698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147736 0.813717 0.630816 2.41013 0.105468

CAGE analysis