Hb_151671_010

Information

Type -
Description -
Location Contig151671: 40-606
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04441g
description hypothetical protein
nr
ID XP_006382686.1
description hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5GAD8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04441g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151671_010 0.0 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
2 Hb_001514_060 0.1731522542 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
3 Hb_002686_400 0.199243533 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
4 Hb_007137_030 0.2085747632 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
5 Hb_000659_020 0.2096394822 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
6 Hb_006738_060 0.2148929625 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001544_080 0.2154768482 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
8 Hb_011885_010 0.2160927727 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_002760_040 0.2181090895 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
10 Hb_000483_230 0.2236276779 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
11 Hb_025194_010 0.2281385288 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
12 Hb_009897_020 0.2290113936 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_004648_070 0.2369100722 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_001608_030 0.2378902023 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
15 Hb_138575_010 0.2391849703 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_000488_020 0.2422623147 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
17 Hb_003525_020 0.2432674072 - - conserved hypothetical protein [Ricinus communis]
18 Hb_162074_010 0.2452580871 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_001338_050 0.2468454478 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
20 Hb_000181_440 0.2482435919 - - -

Gene co-expression network

sample Hb_151671_010 Hb_151671_010 Hb_001514_060 Hb_001514_060 Hb_151671_010--Hb_001514_060 Hb_002686_400 Hb_002686_400 Hb_151671_010--Hb_002686_400 Hb_007137_030 Hb_007137_030 Hb_151671_010--Hb_007137_030 Hb_000659_020 Hb_000659_020 Hb_151671_010--Hb_000659_020 Hb_006738_060 Hb_006738_060 Hb_151671_010--Hb_006738_060 Hb_001544_080 Hb_001544_080 Hb_151671_010--Hb_001544_080 Hb_162074_010 Hb_162074_010 Hb_001514_060--Hb_162074_010 Hb_009897_020 Hb_009897_020 Hb_001514_060--Hb_009897_020 Hb_000488_020 Hb_000488_020 Hb_001514_060--Hb_000488_020 Hb_004648_070 Hb_004648_070 Hb_001514_060--Hb_004648_070 Hb_000732_080 Hb_000732_080 Hb_001514_060--Hb_000732_080 Hb_002760_040 Hb_002760_040 Hb_001514_060--Hb_002760_040 Hb_002686_400--Hb_009897_020 Hb_000010_350 Hb_000010_350 Hb_002686_400--Hb_000010_350 Hb_033642_070 Hb_033642_070 Hb_002686_400--Hb_033642_070 Hb_002686_400--Hb_002760_040 Hb_000866_370 Hb_000866_370 Hb_002686_400--Hb_000866_370 Hb_002686_400--Hb_006738_060 Hb_001608_030 Hb_001608_030 Hb_007137_030--Hb_001608_030 Hb_093177_010 Hb_093177_010 Hb_007137_030--Hb_093177_010 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010 Hb_000659_020--Hb_007137_030 Hb_003226_080 Hb_003226_080 Hb_000659_020--Hb_003226_080 Hb_001079_030 Hb_001079_030 Hb_000659_020--Hb_001079_030 Hb_000659_020--Hb_093177_010 Hb_000659_020--Hb_001514_060 Hb_008246_090 Hb_008246_090 Hb_000659_020--Hb_008246_090 Hb_000984_100 Hb_000984_100 Hb_006738_060--Hb_000984_100 Hb_057079_020 Hb_057079_020 Hb_006738_060--Hb_057079_020 Hb_007618_010 Hb_007618_010 Hb_006738_060--Hb_007618_010 Hb_000189_120 Hb_000189_120 Hb_006738_060--Hb_000189_120 Hb_006738_060--Hb_001608_030 Hb_117895_010 Hb_117895_010 Hb_001544_080--Hb_117895_010 Hb_011716_110 Hb_011716_110 Hb_001544_080--Hb_011716_110 Hb_011310_200 Hb_011310_200 Hb_001544_080--Hb_011310_200 Hb_001544_080--Hb_000866_370 Hb_009897_010 Hb_009897_010 Hb_001544_080--Hb_009897_010 Hb_029977_050 Hb_029977_050 Hb_001544_080--Hb_029977_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.549649 21.2201 0.963817 4.33316 7.12757 2.16455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0 1.19856 4.23253 0.662604

CAGE analysis