Hb_129204_040

Information

Type -
Description -
Location Contig129204: 27582-30727
Sequence    

Annotation

kegg
ID rcu:RCOM_1048520
description Meiotic coiled-coil protein, putative
nr
ID XP_012076819.1
description PREDICTED: meiotic nuclear division protein 1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q8GYD2
description Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 SV=1
trembl
ID A0A067KCC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07333 PE=4 SV=1
Gene Ontology
ID GO:0005622
description meiotic nuclear division protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08818: 27658-29069 , PASA_asmbl_08819: 29142-30722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129204_040 0.0 - - PREDICTED: meiotic nuclear division protein 1 homolog isoform X1 [Jatropha curcas]
2 Hb_004970_140 0.1306439873 - - PREDICTED: uncharacterized protein LOC105633635 [Jatropha curcas]
3 Hb_000184_240 0.1369636378 - - PREDICTED: uncharacterized protein LOC105647985 isoform X2 [Jatropha curcas]
4 Hb_004586_150 0.1468661994 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
5 Hb_004137_100 0.1549919473 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
6 Hb_000035_200 0.1627686739 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
7 Hb_030736_060 0.1671352277 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
8 Hb_000152_790 0.1671692194 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
9 Hb_002375_040 0.1700319113 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
10 Hb_002676_120 0.1718447817 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
11 Hb_001227_130 0.1749141867 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
12 Hb_011282_060 0.1770072289 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
13 Hb_182782_010 0.1785709484 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000987_040 0.1787982473 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
15 Hb_148079_010 0.1793220427 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
16 Hb_007786_030 0.182624848 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
17 Hb_027746_020 0.184790735 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
18 Hb_000579_070 0.1878163335 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
19 Hb_001205_250 0.1884589244 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
20 Hb_000300_600 0.1885203507 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_129204_040 Hb_129204_040 Hb_004970_140 Hb_004970_140 Hb_129204_040--Hb_004970_140 Hb_000184_240 Hb_000184_240 Hb_129204_040--Hb_000184_240 Hb_004586_150 Hb_004586_150 Hb_129204_040--Hb_004586_150 Hb_004137_100 Hb_004137_100 Hb_129204_040--Hb_004137_100 Hb_000035_200 Hb_000035_200 Hb_129204_040--Hb_000035_200 Hb_030736_060 Hb_030736_060 Hb_129204_040--Hb_030736_060 Hb_004970_140--Hb_000035_200 Hb_000212_380 Hb_000212_380 Hb_004970_140--Hb_000212_380 Hb_002375_040 Hb_002375_040 Hb_004970_140--Hb_002375_040 Hb_002660_150 Hb_002660_150 Hb_004970_140--Hb_002660_150 Hb_011282_060 Hb_011282_060 Hb_004970_140--Hb_011282_060 Hb_004970_140--Hb_000184_240 Hb_000184_240--Hb_004586_150 Hb_000082_010 Hb_000082_010 Hb_000184_240--Hb_000082_010 Hb_000483_310 Hb_000483_310 Hb_000184_240--Hb_000483_310 Hb_002676_120 Hb_002676_120 Hb_000184_240--Hb_002676_120 Hb_009193_090 Hb_009193_090 Hb_000184_240--Hb_009193_090 Hb_000579_070 Hb_000579_070 Hb_004586_150--Hb_000579_070 Hb_004586_150--Hb_002676_120 Hb_000963_040 Hb_000963_040 Hb_004586_150--Hb_000963_040 Hb_004586_150--Hb_004137_100 Hb_000261_210 Hb_000261_210 Hb_004586_150--Hb_000261_210 Hb_004137_100--Hb_009193_090 Hb_004137_100--Hb_000184_240 Hb_000600_060 Hb_000600_060 Hb_004137_100--Hb_000600_060 Hb_007545_120 Hb_007545_120 Hb_004137_100--Hb_007545_120 Hb_002391_360 Hb_002391_360 Hb_004137_100--Hb_002391_360 Hb_000146_040 Hb_000146_040 Hb_000035_200--Hb_000146_040 Hb_000696_010 Hb_000696_010 Hb_000035_200--Hb_000696_010 Hb_131035_010 Hb_131035_010 Hb_000035_200--Hb_131035_010 Hb_001500_110 Hb_001500_110 Hb_000035_200--Hb_001500_110 Hb_000270_520 Hb_000270_520 Hb_000035_200--Hb_000270_520 Hb_016347_020 Hb_016347_020 Hb_030736_060--Hb_016347_020 Hb_000684_080 Hb_000684_080 Hb_030736_060--Hb_000684_080 Hb_121089_030 Hb_121089_030 Hb_030736_060--Hb_121089_030 Hb_030736_060--Hb_000963_040 Hb_030736_060--Hb_000261_210 Hb_001227_130 Hb_001227_130 Hb_030736_060--Hb_001227_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53053 0.527397 4.69917 4.75038 3.06477 4.21181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42027 0.679822 3.00415 4.43213 0.686725

CAGE analysis