Hb_119316_010

Information

Type -
Description -
Location Contig119316: 1-865
Sequence    

Annotation

kegg
ID rcu:RCOM_0838150
description tryptophan biosynthesis protein, putative (EC:5.3.1.24)
nr
ID XP_002528298.1
description tryptophan biosynthesis protein, putative [Ricinus communis]
swissprot
ID Q42440
description N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic OS=Arabidopsis thaliana GN=PAI1 PE=2 SV=1
trembl
ID B9SQM9
description Tryptophan biosynthesis protein, putative OS=Ricinus communis GN=RCOM_0838150 PE=3 SV=1
Gene Ontology
ID GO:0009507
description phosphoribosylanthranilate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119316_010 0.0 - - tryptophan biosynthesis protein, putative [Ricinus communis]
2 Hb_001865_090 0.1241240063 - - hypothetical protein VITISV_005773 [Vitis vinifera]
3 Hb_005460_060 0.1392684449 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
4 Hb_000803_200 0.1393625804 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
5 Hb_002303_060 0.1410289635 - - conserved hypothetical protein [Ricinus communis]
6 Hb_166574_010 0.1414833571 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
7 Hb_000436_030 0.1415063441 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001575_060 0.1429229161 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
9 Hb_000292_060 0.1436985096 - - transporter, putative [Ricinus communis]
10 Hb_001511_260 0.1448041892 - - tryptophan biosynthesis protein, putative [Ricinus communis]
11 Hb_002314_010 0.1458053603 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
12 Hb_002184_090 0.1463673108 - - DNA binding protein, putative [Ricinus communis]
13 Hb_001754_080 0.1465186054 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
14 Hb_007113_070 0.1474782301 - - protein with unknown function [Ricinus communis]
15 Hb_045003_010 0.1480338677 - - Stomatin-1, putative [Ricinus communis]
16 Hb_000566_120 0.1483204383 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
17 Hb_000127_140 0.1483879034 - - transporter-related family protein [Populus trichocarpa]
18 Hb_004814_010 0.1491209085 - - PREDICTED: uncharacterized protein LOC105633486 [Jatropha curcas]
19 Hb_001195_060 0.1495852016 - - Protein yrdA, putative [Ricinus communis]
20 Hb_000676_390 0.14966126 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_119316_010 Hb_119316_010 Hb_001865_090 Hb_001865_090 Hb_119316_010--Hb_001865_090 Hb_005460_060 Hb_005460_060 Hb_119316_010--Hb_005460_060 Hb_000803_200 Hb_000803_200 Hb_119316_010--Hb_000803_200 Hb_002303_060 Hb_002303_060 Hb_119316_010--Hb_002303_060 Hb_166574_010 Hb_166574_010 Hb_119316_010--Hb_166574_010 Hb_000436_030 Hb_000436_030 Hb_119316_010--Hb_000436_030 Hb_000029_070 Hb_000029_070 Hb_001865_090--Hb_000029_070 Hb_001865_090--Hb_166574_010 Hb_008147_090 Hb_008147_090 Hb_001865_090--Hb_008147_090 Hb_001754_080 Hb_001754_080 Hb_001865_090--Hb_001754_080 Hb_000120_770 Hb_000120_770 Hb_001865_090--Hb_000120_770 Hb_001489_110 Hb_001489_110 Hb_001865_090--Hb_001489_110 Hb_000110_120 Hb_000110_120 Hb_005460_060--Hb_000110_120 Hb_004984_030 Hb_004984_030 Hb_005460_060--Hb_004984_030 Hb_098315_020 Hb_098315_020 Hb_005460_060--Hb_098315_020 Hb_000077_180 Hb_000077_180 Hb_005460_060--Hb_000077_180 Hb_002060_010 Hb_002060_010 Hb_005460_060--Hb_002060_010 Hb_000946_090 Hb_000946_090 Hb_005460_060--Hb_000946_090 Hb_000849_130 Hb_000849_130 Hb_000803_200--Hb_000849_130 Hb_006326_040 Hb_006326_040 Hb_000803_200--Hb_006326_040 Hb_055062_020 Hb_055062_020 Hb_000803_200--Hb_055062_020 Hb_001511_260 Hb_001511_260 Hb_000803_200--Hb_001511_260 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000045_310 Hb_000045_310 Hb_000803_200--Hb_000045_310 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_000127_140 Hb_000127_140 Hb_166574_010--Hb_000127_140 Hb_166574_010--Hb_008147_090 Hb_007894_010 Hb_007894_010 Hb_166574_010--Hb_007894_010 Hb_010368_050 Hb_010368_050 Hb_166574_010--Hb_010368_050 Hb_000181_350 Hb_000181_350 Hb_166574_010--Hb_000181_350 Hb_011485_020 Hb_011485_020 Hb_000436_030--Hb_011485_020 Hb_000320_330 Hb_000320_330 Hb_000436_030--Hb_000320_330 Hb_000479_160 Hb_000479_160 Hb_000436_030--Hb_000479_160 Hb_000292_060 Hb_000292_060 Hb_000436_030--Hb_000292_060 Hb_001329_150 Hb_001329_150 Hb_000436_030--Hb_001329_150 Hb_000436_030--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.795867 0.441514 4.38686 6.21836 2.32656 2.35827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98821 7.31563 4.95021 1.56116 2.90166

CAGE analysis