Hb_056196_040

Information

Type -
Description -
Location Contig56196: 18488-20060
Sequence    

Annotation

kegg
ID rcu:RCOM_1488550
description hypothetical protein
nr
ID XP_002515955.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID B9RQD6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1488550 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein iq-domain 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056196_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004545_020 0.2983273657 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
3 Hb_052764_040 0.3016917583 - - syntaxin 125 family protein [Populus trichocarpa]
4 Hb_001300_210 0.3044522151 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
5 Hb_002518_060 0.3163615421 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
6 Hb_000679_120 0.3292703431 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
7 Hb_001016_010 0.3316610146 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002681_030 0.3402129548 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
9 Hb_000138_050 0.3472362929 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
10 Hb_000544_160 0.3523680052 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
11 Hb_005489_030 0.3605902053 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
12 Hb_001195_180 0.3612012635 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
13 Hb_002067_010 0.3621263059 - - conserved hypothetical protein [Ricinus communis]
14 Hb_032208_020 0.3639532364 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
15 Hb_003581_180 0.3657475365 - - Pectate lyase precursor, putative [Ricinus communis]
16 Hb_002685_050 0.3687527272 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
17 Hb_003038_250 0.3768101941 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
18 Hb_000215_370 0.3773288767 - - myoinositol oxygenase, putative [Ricinus communis]
19 Hb_127743_020 0.3789773596 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
20 Hb_001252_240 0.3821980256 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_056196_040 Hb_056196_040 Hb_004545_020 Hb_004545_020 Hb_056196_040--Hb_004545_020 Hb_052764_040 Hb_052764_040 Hb_056196_040--Hb_052764_040 Hb_001300_210 Hb_001300_210 Hb_056196_040--Hb_001300_210 Hb_002518_060 Hb_002518_060 Hb_056196_040--Hb_002518_060 Hb_000679_120 Hb_000679_120 Hb_056196_040--Hb_000679_120 Hb_001016_010 Hb_001016_010 Hb_056196_040--Hb_001016_010 Hb_004545_020--Hb_001300_210 Hb_002259_200 Hb_002259_200 Hb_004545_020--Hb_002259_200 Hb_003750_070 Hb_003750_070 Hb_004545_020--Hb_003750_070 Hb_001252_240 Hb_001252_240 Hb_004545_020--Hb_001252_240 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040 Hb_003038_250 Hb_003038_250 Hb_052764_040--Hb_003038_250 Hb_000700_030 Hb_000700_030 Hb_052764_040--Hb_000700_030 Hb_004449_140 Hb_004449_140 Hb_052764_040--Hb_004449_140 Hb_044653_080 Hb_044653_080 Hb_052764_040--Hb_044653_080 Hb_051997_020 Hb_051997_020 Hb_052764_040--Hb_051997_020 Hb_001214_190 Hb_001214_190 Hb_052764_040--Hb_001214_190 Hb_002681_030 Hb_002681_030 Hb_001300_210--Hb_002681_030 Hb_032208_020 Hb_032208_020 Hb_001300_210--Hb_032208_020 Hb_003927_120 Hb_003927_120 Hb_001300_210--Hb_003927_120 Hb_001300_210--Hb_003750_070 Hb_004228_080 Hb_004228_080 Hb_001300_210--Hb_004228_080 Hb_002518_060--Hb_002681_030 Hb_000215_370 Hb_000215_370 Hb_002518_060--Hb_000215_370 Hb_000421_180 Hb_000421_180 Hb_002518_060--Hb_000421_180 Hb_000708_040 Hb_000708_040 Hb_002518_060--Hb_000708_040 Hb_085226_010 Hb_085226_010 Hb_002518_060--Hb_085226_010 Hb_000684_240 Hb_000684_240 Hb_002518_060--Hb_000684_240 Hb_005725_200 Hb_005725_200 Hb_000679_120--Hb_005725_200 Hb_003897_020 Hb_003897_020 Hb_000679_120--Hb_003897_020 Hb_000321_080 Hb_000321_080 Hb_000679_120--Hb_000321_080 Hb_002641_040 Hb_002641_040 Hb_000679_120--Hb_002641_040 Hb_001431_110 Hb_001431_110 Hb_000679_120--Hb_001431_110 Hb_002067_010 Hb_002067_010 Hb_000679_120--Hb_002067_010 Hb_004162_230 Hb_004162_230 Hb_001016_010--Hb_004162_230 Hb_000544_030 Hb_000544_030 Hb_001016_010--Hb_000544_030 Hb_002411_060 Hb_002411_060 Hb_001016_010--Hb_002411_060 Hb_025214_120 Hb_025214_120 Hb_001016_010--Hb_025214_120 Hb_010998_050 Hb_010998_050 Hb_001016_010--Hb_010998_050 Hb_030627_070 Hb_030627_070 Hb_001016_010--Hb_030627_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116549 0 0.253302 0.064143 0 0.0472981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0825462 0 0.115597 0 0

CAGE analysis