Hb_023226_100

Information

Type -
Description -
Location Contig23226: 126649-130718
Sequence    

Annotation

kegg
ID bvg:104903172
description uncharacterized LOC104903172
nr
ID XP_010689472.1
description PREDICTED: uncharacterized protein LOC104903172 [Beta vulgaris subsp. vulgaris]
swissprot
ID F4IIU4
description 187-kDa microtubule-associated protein AIR9 OS=Arabidopsis thaliana GN=AIR9 PE=1 SV=1
trembl
ID A0A0B2PP08
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_046967 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_100 0.0 - - PREDICTED: uncharacterized protein LOC104903172 [Beta vulgaris subsp. vulgaris]
2 Hb_005883_020 0.1922588149 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
3 Hb_000358_140 0.1924736456 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001916_100 0.2085722126 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Jatropha curcas]
5 Hb_000349_240 0.208992222 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
6 Hb_014497_090 0.2175208574 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
7 Hb_018118_010 0.2235669656 - - DNA polymerase I, putative [Ricinus communis]
8 Hb_000331_650 0.2243952049 - - PREDICTED: peptide methionine sulfoxide reductase-like [Jatropha curcas]
9 Hb_000300_120 0.22462285 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
10 Hb_008206_060 0.224627315 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000084_280 0.2258632158 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
12 Hb_010812_050 0.2261025911 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
13 Hb_003900_030 0.2270616621 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
14 Hb_000041_090 0.2275935036 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
15 Hb_002027_090 0.2282755282 - - -
16 Hb_006816_430 0.2294685544 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
17 Hb_003805_050 0.2298834704 - - -
18 Hb_000753_200 0.230567326 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
19 Hb_000808_080 0.2310302089 - - PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
20 Hb_000072_250 0.2314106514 transcription factor TF Family: Orphans -

Gene co-expression network

sample Hb_023226_100 Hb_023226_100 Hb_005883_020 Hb_005883_020 Hb_023226_100--Hb_005883_020 Hb_000358_140 Hb_000358_140 Hb_023226_100--Hb_000358_140 Hb_001916_100 Hb_001916_100 Hb_023226_100--Hb_001916_100 Hb_000349_240 Hb_000349_240 Hb_023226_100--Hb_000349_240 Hb_014497_090 Hb_014497_090 Hb_023226_100--Hb_014497_090 Hb_018118_010 Hb_018118_010 Hb_023226_100--Hb_018118_010 Hb_003900_030 Hb_003900_030 Hb_005883_020--Hb_003900_030 Hb_001828_120 Hb_001828_120 Hb_005883_020--Hb_001828_120 Hb_005883_020--Hb_000358_140 Hb_007192_090 Hb_007192_090 Hb_005883_020--Hb_007192_090 Hb_004254_100 Hb_004254_100 Hb_005883_020--Hb_004254_100 Hb_002233_130 Hb_002233_130 Hb_005883_020--Hb_002233_130 Hb_002027_090 Hb_002027_090 Hb_000358_140--Hb_002027_090 Hb_010812_050 Hb_010812_050 Hb_000358_140--Hb_010812_050 Hb_006816_180 Hb_006816_180 Hb_000358_140--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_000358_140--Hb_041327_020 Hb_000358_140--Hb_002233_130 Hb_001916_100--Hb_003900_030 Hb_001916_100--Hb_000358_140 Hb_001916_100--Hb_010812_050 Hb_001916_100--Hb_002027_090 Hb_001916_100--Hb_005883_020 Hb_001916_100--Hb_002233_130 Hb_001790_080 Hb_001790_080 Hb_000349_240--Hb_001790_080 Hb_000349_240--Hb_018118_010 Hb_009252_040 Hb_009252_040 Hb_000349_240--Hb_009252_040 Hb_000087_140 Hb_000087_140 Hb_000349_240--Hb_000087_140 Hb_000033_110 Hb_000033_110 Hb_000349_240--Hb_000033_110 Hb_000007_010 Hb_000007_010 Hb_000349_240--Hb_000007_010 Hb_002524_040 Hb_002524_040 Hb_014497_090--Hb_002524_040 Hb_004543_030 Hb_004543_030 Hb_014497_090--Hb_004543_030 Hb_000832_300 Hb_000832_300 Hb_014497_090--Hb_000832_300 Hb_002084_040 Hb_002084_040 Hb_014497_090--Hb_002084_040 Hb_034243_020 Hb_034243_020 Hb_014497_090--Hb_034243_020 Hb_004884_010 Hb_004884_010 Hb_014497_090--Hb_004884_010 Hb_000331_560 Hb_000331_560 Hb_018118_010--Hb_000331_560 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_018118_010--Hb_003203_030 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0813361 0.120388 0.0651933 0 0.0762135 0.0879249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.065384 0.0171489 0.0325468 0.0204617 0.181374

CAGE analysis