Hb_011861_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig11861: 34473-36715
Sequence    

Annotation

kegg
ID cit:102611807
description probable disease resistance protein At5g63020-like
nr
ID XP_010110286.1
description putative disease resistance protein [Morus notabilis]
swissprot
ID O64973
description Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2
trembl
ID W9S4U3
description Putative disease resistance protein OS=Morus notabilis GN=L484_019440 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05520: 36621-36885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_030 0.0 desease resistance Gene Name: NB-ARC putative disease resistance protein [Morus notabilis]
2 Hb_002301_110 0.1989700609 - - PREDICTED: protein E6-like [Populus euphratica]
3 Hb_002072_040 0.21915338 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
4 Hb_008695_150 0.221673306 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
5 Hb_000028_490 0.2280019413 - - calmodulin-like protein 6a [Populus trichocarpa]
6 Hb_008790_040 0.2294541317 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
7 Hb_005333_080 0.2300445823 - - conserved hypothetical protein [Ricinus communis]
8 Hb_021576_120 0.2301062638 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
9 Hb_002928_020 0.231115563 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000032_250 0.2331267217 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
11 Hb_023278_030 0.2332530806 - - zinc finger protein, putative [Ricinus communis]
12 Hb_127416_010 0.23448343 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
13 Hb_000616_010 0.2347287117 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004297_090 0.2352863568 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
15 Hb_008066_080 0.2353580686 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
16 Hb_000002_350 0.2373779333 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
17 Hb_001048_100 0.237474956 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
18 Hb_000692_110 0.2379185491 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
19 Hb_001459_090 0.2383641388 - - unnamed protein product [Vitis vinifera]
20 Hb_007590_110 0.2386063585 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]

Gene co-expression network

sample Hb_011861_030 Hb_011861_030 Hb_002301_110 Hb_002301_110 Hb_011861_030--Hb_002301_110 Hb_002072_040 Hb_002072_040 Hb_011861_030--Hb_002072_040 Hb_008695_150 Hb_008695_150 Hb_011861_030--Hb_008695_150 Hb_000028_490 Hb_000028_490 Hb_011861_030--Hb_000028_490 Hb_008790_040 Hb_008790_040 Hb_011861_030--Hb_008790_040 Hb_005333_080 Hb_005333_080 Hb_011861_030--Hb_005333_080 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_001472_110 Hb_001472_110 Hb_002301_110--Hb_001472_110 Hb_164926_040 Hb_164926_040 Hb_002301_110--Hb_164926_040 Hb_002301_110--Hb_002072_040 Hb_000165_200 Hb_000165_200 Hb_002301_110--Hb_000165_200 Hb_002339_030 Hb_002339_030 Hb_002301_110--Hb_002339_030 Hb_002025_380 Hb_002025_380 Hb_002072_040--Hb_002025_380 Hb_009767_050 Hb_009767_050 Hb_002072_040--Hb_009767_050 Hb_005168_020 Hb_005168_020 Hb_002072_040--Hb_005168_020 Hb_006277_030 Hb_006277_030 Hb_002072_040--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070 Hb_000042_380 Hb_000042_380 Hb_008695_150--Hb_000042_380 Hb_005485_070 Hb_005485_070 Hb_008695_150--Hb_005485_070 Hb_008695_150--Hb_005333_080 Hb_000116_240 Hb_000116_240 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_000731_210 Hb_000731_210 Hb_008695_150--Hb_000731_210 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_158092_040 Hb_158092_040 Hb_008790_040--Hb_158092_040 Hb_001310_050 Hb_001310_050 Hb_008790_040--Hb_001310_050 Hb_008066_080 Hb_008066_080 Hb_008790_040--Hb_008066_080 Hb_006889_030 Hb_006889_030 Hb_008790_040--Hb_006889_030 Hb_006153_180 Hb_006153_180 Hb_008790_040--Hb_006153_180 Hb_008790_040--Hb_002301_110 Hb_010672_050 Hb_010672_050 Hb_005333_080--Hb_010672_050 Hb_012760_090 Hb_012760_090 Hb_005333_080--Hb_012760_090 Hb_005333_080--Hb_158092_040 Hb_005333_080--Hb_000116_240 Hb_001019_160 Hb_001019_160 Hb_005333_080--Hb_001019_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0242121 0.111578 0.102916 0.0195857 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0331712 0.104337 0.0369692

CAGE analysis