Hb_011457_070

Information

Type -
Description -
Location Contig11457: 33156-39790
Sequence    

Annotation

kegg
ID rcu:RCOM_0646290
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative (EC:2.1.1.10)
nr
ID XP_002524742.1
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
swissprot
ID Q9M1W4
description Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1
trembl
ID B9SFH3
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative OS=Ricinus communis GN=RCOM_0646290 PE=4 SV=1
Gene Ontology
ID GO:0008898
description homocysteine s-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04397: 35409-39637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_070 0.0 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
2 Hb_004218_030 0.0851129622 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004162_090 0.0912950342 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
4 Hb_025194_040 0.0974612385 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
5 Hb_009193_120 0.1058745413 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
6 Hb_005143_030 0.1105531024 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
7 Hb_009476_040 0.1145440249 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001417_050 0.1194465879 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
9 Hb_144831_010 0.1204700747 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
10 Hb_005699_090 0.1207777928 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
11 Hb_002784_110 0.1211318196 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
12 Hb_000446_120 0.1218128448 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
13 Hb_000003_190 0.122519829 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
14 Hb_005731_090 0.1227215167 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
15 Hb_000035_290 0.124246422 - - RNA recognition motif-containing family protein [Populus trichocarpa]
16 Hb_000679_330 0.1244689292 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
17 Hb_000023_330 0.1248038136 - - RNA recognition motif-containing family protein [Populus trichocarpa]
18 Hb_004453_110 0.1257597804 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
19 Hb_009175_020 0.126022879 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
20 Hb_007635_030 0.1263402133 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_011457_070 Hb_011457_070 Hb_004218_030 Hb_004218_030 Hb_011457_070--Hb_004218_030 Hb_004162_090 Hb_004162_090 Hb_011457_070--Hb_004162_090 Hb_025194_040 Hb_025194_040 Hb_011457_070--Hb_025194_040 Hb_009193_120 Hb_009193_120 Hb_011457_070--Hb_009193_120 Hb_005143_030 Hb_005143_030 Hb_011457_070--Hb_005143_030 Hb_009476_040 Hb_009476_040 Hb_011457_070--Hb_009476_040 Hb_000343_030 Hb_000343_030 Hb_004218_030--Hb_000343_030 Hb_001268_350 Hb_001268_350 Hb_004218_030--Hb_001268_350 Hb_002784_110 Hb_002784_110 Hb_004218_030--Hb_002784_110 Hb_000327_340 Hb_000327_340 Hb_004218_030--Hb_000327_340 Hb_004218_030--Hb_005143_030 Hb_001638_270 Hb_001638_270 Hb_004162_090--Hb_001638_270 Hb_000035_290 Hb_000035_290 Hb_004162_090--Hb_000035_290 Hb_001205_230 Hb_001205_230 Hb_004162_090--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_004162_090--Hb_027346_010 Hb_005699_090 Hb_005699_090 Hb_004162_090--Hb_005699_090 Hb_004162_090--Hb_025194_040 Hb_025194_040--Hb_000035_290 Hb_025194_040--Hb_002784_110 Hb_000343_120 Hb_000343_120 Hb_025194_040--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_025194_040--Hb_009476_040 Hb_001343_040 Hb_001343_040 Hb_009193_120--Hb_001343_040 Hb_001449_040 Hb_001449_040 Hb_009193_120--Hb_001449_040 Hb_001442_060 Hb_001442_060 Hb_009193_120--Hb_001442_060 Hb_006373_010 Hb_006373_010 Hb_009193_120--Hb_006373_010 Hb_007083_030 Hb_007083_030 Hb_009193_120--Hb_007083_030 Hb_001511_240 Hb_001511_240 Hb_009193_120--Hb_001511_240 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_028487_010 Hb_028487_010 Hb_005143_030--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120 Hb_000183_020 Hb_000183_020 Hb_009476_040--Hb_000183_020 Hb_000922_370 Hb_000922_370 Hb_009476_040--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_009476_040--Hb_074969_010 Hb_007426_130 Hb_007426_130 Hb_009476_040--Hb_007426_130 Hb_009476_040--Hb_002784_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9422 13.0865 1.87202 7.21406 13.4422 10.3495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0052 6.13746 3.2711 8.85649 9.40768

CAGE analysis