Hb_007645_070

Information

Type -
Description -
Location Contig7645: 22166-22458
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00060
description psbE; photosystem II protein V
nr
ID YP_001531230.1
description photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
swissprot
ID Q8MAV7
description Cytochrome b559 subunit alpha OS=Cuscuta gronovii GN=psbE PE=2 SV=4
trembl
ID W5AG25
description Cytochrome b559 subunit alpha OS=Triticum aestivum PE=3 SV=1
Gene Ontology
ID GO:0009535
description photosystem ii protein v

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57394: 21486-22526 , PASA_asmbl_57395: 22671-22792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_070 0.0 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
2 Hb_000832_050 0.1124835146 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
3 Hb_001610_100 0.1342079893 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
4 Hb_068804_110 0.1399591425 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_101097_010 0.1429008011 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_000983_200 0.1431063094 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
7 Hb_001089_120 0.1432040927 - - PREDICTED: pectinesterase [Jatropha curcas]
8 Hb_003251_010 0.1462222472 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
9 Hb_001951_040 0.1464929442 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
10 Hb_000156_240 0.1467151233 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
11 Hb_000398_110 0.1480520104 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
12 Hb_003208_010 0.1483987427 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
13 Hb_001674_050 0.1484934275 - - cytochrome b6 (chloroplast) [Apios americana]
14 Hb_007595_020 0.1485022064 - - maturase K [Hevea brasiliensis]
15 Hb_004855_030 0.1493207722 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_000504_220 0.1495017192 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
17 Hb_000530_060 0.1501633467 - - -
18 Hb_005736_030 0.1503206519 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
19 Hb_003693_020 0.1503832053 - - Ycf1, partial (chloroplast) [Clusia rosea]
20 Hb_000282_110 0.1516502387 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]

Gene co-expression network

sample Hb_007645_070 Hb_007645_070 Hb_000832_050 Hb_000832_050 Hb_007645_070--Hb_000832_050 Hb_001610_100 Hb_001610_100 Hb_007645_070--Hb_001610_100 Hb_068804_110 Hb_068804_110 Hb_007645_070--Hb_068804_110 Hb_101097_010 Hb_101097_010 Hb_007645_070--Hb_101097_010 Hb_000983_200 Hb_000983_200 Hb_007645_070--Hb_000983_200 Hb_001089_120 Hb_001089_120 Hb_007645_070--Hb_001089_120 Hb_004855_030 Hb_004855_030 Hb_000832_050--Hb_004855_030 Hb_000349_150 Hb_000349_150 Hb_000832_050--Hb_000349_150 Hb_000893_040 Hb_000893_040 Hb_000832_050--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_000832_050--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_000832_050--Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_000832_050--Hb_003251_010 Hb_001610_100--Hb_000832_050 Hb_007101_090 Hb_007101_090 Hb_001610_100--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_001610_100--Hb_003947_020 Hb_001610_100--Hb_068804_110 Hb_003732_030 Hb_003732_030 Hb_001610_100--Hb_003732_030 Hb_001001_130 Hb_001001_130 Hb_001610_100--Hb_001001_130 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_012940_020 Hb_012940_020 Hb_068804_110--Hb_012940_020 Hb_156850_020 Hb_156850_020 Hb_068804_110--Hb_156850_020 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_028960_010 Hb_028960_010 Hb_068804_110--Hb_028960_010 Hb_004807_040 Hb_004807_040 Hb_101097_010--Hb_004807_040 Hb_013405_240 Hb_013405_240 Hb_101097_010--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_101097_010--Hb_007416_250 Hb_000530_060 Hb_000530_060 Hb_101097_010--Hb_000530_060 Hb_000029_150 Hb_000029_150 Hb_101097_010--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_101097_010--Hb_158597_010 Hb_000629_110 Hb_000629_110 Hb_000983_200--Hb_000629_110 Hb_000815_120 Hb_000815_120 Hb_000983_200--Hb_000815_120 Hb_003093_050 Hb_003093_050 Hb_000983_200--Hb_003093_050 Hb_004143_080 Hb_004143_080 Hb_000983_200--Hb_004143_080 Hb_004818_010 Hb_004818_010 Hb_000983_200--Hb_004818_010 Hb_005736_030 Hb_005736_030 Hb_000983_200--Hb_005736_030 Hb_000504_220 Hb_000504_220 Hb_001089_120--Hb_000504_220 Hb_001089_120--Hb_000530_060 Hb_029584_020 Hb_029584_020 Hb_001089_120--Hb_029584_020 Hb_000608_160 Hb_000608_160 Hb_001089_120--Hb_000608_160 Hb_001089_120--Hb_003251_010 Hb_003805_110 Hb_003805_110 Hb_001089_120--Hb_003805_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213442 0 10.829 8.40455 1.69693 1.8105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.366787 79.31

CAGE analysis