Hb_007054_020

Information

Type -
Description -
Location Contig7054: 14000-16804
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007054_020 0.0 - - -
2 Hb_161072_020 0.2587121427 - - -
3 Hb_005935_010 0.280562594 - - -
4 Hb_099387_010 0.2925567053 - - -
5 Hb_175069_010 0.2936186128 - - hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]
6 Hb_075136_010 0.2997244011 - - Protein SSU72, putative [Ricinus communis]
7 Hb_123202_010 0.3009615906 - - thioredoxin h [Hevea brasiliensis]
8 Hb_002400_090 0.3016404757 - - -
9 Hb_002626_020 0.3033246564 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
10 Hb_015609_020 0.3056523778 - - PREDICTED: uncharacterized protein LOC105642775 [Jatropha curcas]
11 Hb_001102_180 0.3067555495 - - eukaryotic translation initiation factor, putative [Ricinus communis]
12 Hb_002025_310 0.315040041 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_004306_070 0.3192132599 - - hypothetical protein 0_18789_01, partial [Pinus taeda]
14 Hb_006502_080 0.3203897467 - - -
15 Hb_000329_770 0.3214083243 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000453_260 0.323420801 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
17 Hb_000157_100 0.3241874427 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
18 Hb_021888_130 0.3243410206 - - -
19 Hb_000703_260 0.3246596212 - - N-acetylglucosamine kinase, putative [Ricinus communis]
20 Hb_000997_330 0.3250691852 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]

Gene co-expression network

sample Hb_007054_020 Hb_007054_020 Hb_161072_020 Hb_161072_020 Hb_007054_020--Hb_161072_020 Hb_005935_010 Hb_005935_010 Hb_007054_020--Hb_005935_010 Hb_099387_010 Hb_099387_010 Hb_007054_020--Hb_099387_010 Hb_175069_010 Hb_175069_010 Hb_007054_020--Hb_175069_010 Hb_075136_010 Hb_075136_010 Hb_007054_020--Hb_075136_010 Hb_123202_010 Hb_123202_010 Hb_007054_020--Hb_123202_010 Hb_000997_330 Hb_000997_330 Hb_161072_020--Hb_000997_330 Hb_081504_010 Hb_081504_010 Hb_161072_020--Hb_081504_010 Hb_004157_120 Hb_004157_120 Hb_161072_020--Hb_004157_120 Hb_002400_090 Hb_002400_090 Hb_161072_020--Hb_002400_090 Hb_001364_040 Hb_001364_040 Hb_161072_020--Hb_001364_040 Hb_021888_130 Hb_021888_130 Hb_161072_020--Hb_021888_130 Hb_002626_020 Hb_002626_020 Hb_005935_010--Hb_002626_020 Hb_068946_010 Hb_068946_010 Hb_005935_010--Hb_068946_010 Hb_002687_050 Hb_002687_050 Hb_005935_010--Hb_002687_050 Hb_005935_010--Hb_002400_090 Hb_005935_010--Hb_123202_010 Hb_008725_200 Hb_008725_200 Hb_005935_010--Hb_008725_200 Hb_001155_030 Hb_001155_030 Hb_099387_010--Hb_001155_030 Hb_001102_180 Hb_001102_180 Hb_099387_010--Hb_001102_180 Hb_005052_020 Hb_005052_020 Hb_099387_010--Hb_005052_020 Hb_000028_140 Hb_000028_140 Hb_099387_010--Hb_000028_140 Hb_006641_010 Hb_006641_010 Hb_099387_010--Hb_006641_010 Hb_001633_170 Hb_001633_170 Hb_099387_010--Hb_001633_170 Hb_077054_010 Hb_077054_010 Hb_175069_010--Hb_077054_010 Hb_005916_030 Hb_005916_030 Hb_175069_010--Hb_005916_030 Hb_080147_090 Hb_080147_090 Hb_175069_010--Hb_080147_090 Hb_075964_010 Hb_075964_010 Hb_175069_010--Hb_075964_010 Hb_007484_040 Hb_007484_040 Hb_175069_010--Hb_007484_040 Hb_000995_050 Hb_000995_050 Hb_175069_010--Hb_000995_050 Hb_000413_160 Hb_000413_160 Hb_075136_010--Hb_000413_160 Hb_000703_260 Hb_000703_260 Hb_075136_010--Hb_000703_260 Hb_006502_080 Hb_006502_080 Hb_075136_010--Hb_006502_080 Hb_002849_040 Hb_002849_040 Hb_075136_010--Hb_002849_040 Hb_005731_140 Hb_005731_140 Hb_075136_010--Hb_005731_140 Hb_000648_030 Hb_000648_030 Hb_075136_010--Hb_000648_030 Hb_000453_260 Hb_000453_260 Hb_123202_010--Hb_000453_260 Hb_010298_010 Hb_010298_010 Hb_123202_010--Hb_010298_010 Hb_000329_770 Hb_000329_770 Hb_123202_010--Hb_000329_770 Hb_006602_010 Hb_006602_010 Hb_123202_010--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_123202_010--Hb_004735_010 Hb_005965_010 Hb_005965_010 Hb_123202_010--Hb_005965_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0581056 0 0.131399 0.48043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164369 0.129107 0.212828 0.217567 0

CAGE analysis