Hb_175069_010

Information

Type -
Description -
Location Contig175069: 252-470
Sequence    

Annotation

kegg
ID pop:POPTR_0002s210401
description hypothetical protein
nr
ID XP_006386771.1
description hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GM11
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s210401g PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175069_010 0.0 - - hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]
2 Hb_077054_010 0.2488580638 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_005916_030 0.249859822 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
4 Hb_080147_090 0.271201433 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
5 Hb_075964_010 0.2781953853 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
6 Hb_007484_040 0.2847944729 - - -
7 Hb_000995_050 0.2858673263 - - 40S ribosomal protein S17C [Hevea brasiliensis]
8 Hb_000347_510 0.2880655406 - - actin binding protein, putative [Ricinus communis]
9 Hb_027913_020 0.2899936853 - - -
10 Hb_007054_020 0.2936186128 - - -
11 Hb_137461_010 0.2940513394 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
12 Hb_005052_020 0.3002882411 - - -
13 Hb_004883_060 0.3007496989 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
14 Hb_004137_080 0.3015722513 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004147_060 0.3083009557 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
16 Hb_003964_090 0.3116944633 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
17 Hb_099387_010 0.3125572884 - - -
18 Hb_032927_010 0.3142151048 - - -
19 Hb_112356_040 0.3154435596 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_087596_010 0.3170754568 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]

Gene co-expression network

sample Hb_175069_010 Hb_175069_010 Hb_077054_010 Hb_077054_010 Hb_175069_010--Hb_077054_010 Hb_005916_030 Hb_005916_030 Hb_175069_010--Hb_005916_030 Hb_080147_090 Hb_080147_090 Hb_175069_010--Hb_080147_090 Hb_075964_010 Hb_075964_010 Hb_175069_010--Hb_075964_010 Hb_007484_040 Hb_007484_040 Hb_175069_010--Hb_007484_040 Hb_000995_050 Hb_000995_050 Hb_175069_010--Hb_000995_050 Hb_010727_010 Hb_010727_010 Hb_077054_010--Hb_010727_010 Hb_081745_010 Hb_081745_010 Hb_077054_010--Hb_081745_010 Hb_001016_110 Hb_001016_110 Hb_077054_010--Hb_001016_110 Hb_000025_340 Hb_000025_340 Hb_077054_010--Hb_000025_340 Hb_087596_010 Hb_087596_010 Hb_077054_010--Hb_087596_010 Hb_073395_010 Hb_073395_010 Hb_077054_010--Hb_073395_010 Hb_005916_030--Hb_000995_050 Hb_000575_080 Hb_000575_080 Hb_005916_030--Hb_000575_080 Hb_005260_020 Hb_005260_020 Hb_005916_030--Hb_005260_020 Hb_022461_010 Hb_022461_010 Hb_005916_030--Hb_022461_010 Hb_001054_130 Hb_001054_130 Hb_005916_030--Hb_001054_130 Hb_006502_080 Hb_006502_080 Hb_005916_030--Hb_006502_080 Hb_005690_020 Hb_005690_020 Hb_080147_090--Hb_005690_020 Hb_000243_010 Hb_000243_010 Hb_080147_090--Hb_000243_010 Hb_000003_350 Hb_000003_350 Hb_080147_090--Hb_000003_350 Hb_048197_010 Hb_048197_010 Hb_080147_090--Hb_048197_010 Hb_005009_020 Hb_005009_020 Hb_080147_090--Hb_005009_020 Hb_075653_020 Hb_075653_020 Hb_080147_090--Hb_075653_020 Hb_001427_060 Hb_001427_060 Hb_075964_010--Hb_001427_060 Hb_171789_010 Hb_171789_010 Hb_075964_010--Hb_171789_010 Hb_032927_010 Hb_032927_010 Hb_075964_010--Hb_032927_010 Hb_075964_010--Hb_005916_030 Hb_005965_010 Hb_005965_010 Hb_075964_010--Hb_005965_010 Hb_115477_010 Hb_115477_010 Hb_075964_010--Hb_115477_010 Hb_116632_010 Hb_116632_010 Hb_007484_040--Hb_116632_010 Hb_003581_010 Hb_003581_010 Hb_007484_040--Hb_003581_010 Hb_168737_010 Hb_168737_010 Hb_007484_040--Hb_168737_010 Hb_007484_040--Hb_001427_060 Hb_000265_130 Hb_000265_130 Hb_007484_040--Hb_000265_130 Hb_013691_030 Hb_013691_030 Hb_007484_040--Hb_013691_030 Hb_120221_010 Hb_120221_010 Hb_000995_050--Hb_120221_010 Hb_000453_260 Hb_000453_260 Hb_000995_050--Hb_000453_260 Hb_000156_130 Hb_000156_130 Hb_000995_050--Hb_000156_130 Hb_002259_030 Hb_002259_030 Hb_000995_050--Hb_002259_030 Hb_000510_090 Hb_000510_090 Hb_000995_050--Hb_000510_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.09645 0.55635 0 1.46706 15.0675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.98822 6.39415 2.7672 5.25442 0

CAGE analysis