Hb_007021_010

Information

Type transcription factor
Description TF Family: B3
Location Contig7021: 6171-7851
Sequence    

Annotation

kegg
ID rcu:RCOM_0939100
description hypothetical protein
nr
ID XP_002519138.1
description hypothetical protein RCOM_0939100 [Ricinus communis]
swissprot
ID Q9ZSH7
description B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1
trembl
ID B9RZG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0939100 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor vrn1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007021_010 0.0 transcription factor TF Family: B3 hypothetical protein RCOM_0939100 [Ricinus communis]
2 Hb_000453_220 0.2820876333 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
3 Hb_001035_070 0.3551917342 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
4 Hb_011249_040 0.3569727329 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
5 Hb_002150_060 0.3629471067 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
6 Hb_001009_130 0.3638825423 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
7 Hb_000226_100 0.3713438578 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_008147_010 0.3714908306 - - hypothetical protein, partial [Pseudomonas fluorescens]
9 Hb_002078_170 0.3715243995 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
10 Hb_018954_010 0.3758294474 - - -
11 Hb_001235_080 0.3769932341 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003177_120 0.3776419101 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
13 Hb_000483_420 0.3778803281 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
14 Hb_003540_130 0.3778889709 - - -
15 Hb_001053_150 0.377938895 - - -
16 Hb_001623_320 0.3785879849 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X1 [Populus euphratica]
17 Hb_000684_240 0.3786328708 - - hypothetical protein RCOM_0819620 [Ricinus communis]
18 Hb_000069_170 0.3798469531 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
19 Hb_004871_050 0.3798891915 - - hypothetical protein F383_22684 [Gossypium arboreum]
20 Hb_132303_010 0.3798979147 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_007021_010 Hb_007021_010 Hb_000453_220 Hb_000453_220 Hb_007021_010--Hb_000453_220 Hb_001035_070 Hb_001035_070 Hb_007021_010--Hb_001035_070 Hb_011249_040 Hb_011249_040 Hb_007021_010--Hb_011249_040 Hb_002150_060 Hb_002150_060 Hb_007021_010--Hb_002150_060 Hb_001009_130 Hb_001009_130 Hb_007021_010--Hb_001009_130 Hb_000226_100 Hb_000226_100 Hb_007021_010--Hb_000226_100 Hb_018954_010 Hb_018954_010 Hb_000453_220--Hb_018954_010 Hb_000009_070 Hb_000009_070 Hb_000453_220--Hb_000009_070 Hb_000083_040 Hb_000083_040 Hb_000453_220--Hb_000083_040 Hb_001534_170 Hb_001534_170 Hb_000453_220--Hb_001534_170 Hb_000211_060 Hb_000211_060 Hb_000453_220--Hb_000211_060 Hb_001053_150 Hb_001053_150 Hb_001035_070--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_001035_070--Hb_004429_070 Hb_000141_030 Hb_000141_030 Hb_001035_070--Hb_000141_030 Hb_001277_090 Hb_001277_090 Hb_001035_070--Hb_001277_090 Hb_002078_480 Hb_002078_480 Hb_001035_070--Hb_002078_480 Hb_029510_040 Hb_029510_040 Hb_001035_070--Hb_029510_040 Hb_168925_010 Hb_168925_010 Hb_011249_040--Hb_168925_010 Hb_039229_010 Hb_039229_010 Hb_011249_040--Hb_039229_010 Hb_080749_010 Hb_080749_010 Hb_011249_040--Hb_080749_010 Hb_000264_220 Hb_000264_220 Hb_011249_040--Hb_000264_220 Hb_012338_020 Hb_012338_020 Hb_011249_040--Hb_012338_020 Hb_002240_040 Hb_002240_040 Hb_011249_040--Hb_002240_040 Hb_000130_110 Hb_000130_110 Hb_002150_060--Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_002150_060--Hb_003994_190 Hb_001545_100 Hb_001545_100 Hb_002150_060--Hb_001545_100 Hb_001096_110 Hb_001096_110 Hb_002150_060--Hb_001096_110 Hb_006153_080 Hb_006153_080 Hb_002150_060--Hb_006153_080 Hb_000712_050 Hb_000712_050 Hb_002150_060--Hb_000712_050 Hb_135624_010 Hb_135624_010 Hb_001009_130--Hb_135624_010 Hb_062244_010 Hb_062244_010 Hb_001009_130--Hb_062244_010 Hb_004413_030 Hb_004413_030 Hb_001009_130--Hb_004413_030 Hb_000144_140 Hb_000144_140 Hb_001009_130--Hb_000144_140 Hb_001277_310 Hb_001277_310 Hb_001009_130--Hb_001277_310 Hb_003446_040 Hb_003446_040 Hb_001009_130--Hb_003446_040 Hb_000440_030 Hb_000440_030 Hb_000226_100--Hb_000440_030 Hb_000226_100--Hb_000264_220 Hb_000705_280 Hb_000705_280 Hb_000226_100--Hb_000705_280 Hb_001943_020 Hb_001943_020 Hb_000226_100--Hb_001943_020 Hb_000184_200 Hb_000184_200 Hb_000226_100--Hb_000184_200 Hb_007975_040 Hb_007975_040 Hb_000226_100--Hb_007975_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351105 0 0.0131023 0.0266384 0 0.0367429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0315363 0.176087 0 0

CAGE analysis