Hb_000453_220

Information

Type -
Description -
Location Contig453: 156553-159609
Sequence    

Annotation

kegg
ID rcu:RCOM_0784640
description serine-threonine protein kinase, plant-type, putative
nr
ID KDP34529.1
description hypothetical protein JCGZ_11079 [Jatropha curcas]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID A0A067KRS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11079 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_220 0.0 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
2 Hb_018954_010 0.2445264506 - - -
3 Hb_000009_070 0.2706312384 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
4 Hb_000083_040 0.2811791577 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007021_010 0.2820876333 transcription factor TF Family: B3 hypothetical protein RCOM_0939100 [Ricinus communis]
6 Hb_001534_170 0.2845533504 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
7 Hb_000211_060 0.2859467883 - - glutathione peroxidase [Populus euphratica]
8 Hb_000661_190 0.2876517001 - - PREDICTED: protein spt2-like [Jatropha curcas]
9 Hb_168925_010 0.2891722422 - - -
10 Hb_100873_030 0.2967139805 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
11 Hb_007768_030 0.2998475403 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_009474_010 0.3027318648 - - -
13 Hb_039229_010 0.3089908277 - - -
14 Hb_000204_200 0.3113360155 - - hypothetical protein VITISV_019818 [Vitis vinifera]
15 Hb_030630_010 0.3131264473 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
16 Hb_011360_020 0.3144437417 - - -
17 Hb_010417_010 0.317099476 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_021156_030 0.3192070099 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
19 Hb_008790_050 0.3214109737 - - conserved hypothetical protein [Ricinus communis]
20 Hb_156473_010 0.3218756485 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]

Gene co-expression network

sample Hb_000453_220 Hb_000453_220 Hb_018954_010 Hb_018954_010 Hb_000453_220--Hb_018954_010 Hb_000009_070 Hb_000009_070 Hb_000453_220--Hb_000009_070 Hb_000083_040 Hb_000083_040 Hb_000453_220--Hb_000083_040 Hb_007021_010 Hb_007021_010 Hb_000453_220--Hb_007021_010 Hb_001534_170 Hb_001534_170 Hb_000453_220--Hb_001534_170 Hb_000211_060 Hb_000211_060 Hb_000453_220--Hb_000211_060 Hb_100873_030 Hb_100873_030 Hb_018954_010--Hb_100873_030 Hb_000972_010 Hb_000972_010 Hb_018954_010--Hb_000972_010 Hb_018954_010--Hb_001534_170 Hb_000141_240 Hb_000141_240 Hb_018954_010--Hb_000141_240 Hb_017124_020 Hb_017124_020 Hb_018954_010--Hb_017124_020 Hb_000995_070 Hb_000995_070 Hb_018954_010--Hb_000995_070 Hb_010417_010 Hb_010417_010 Hb_000009_070--Hb_010417_010 Hb_000009_070--Hb_100873_030 Hb_000009_070--Hb_000083_040 Hb_002073_120 Hb_002073_120 Hb_000009_070--Hb_002073_120 Hb_154340_010 Hb_154340_010 Hb_000009_070--Hb_154340_010 Hb_000009_070--Hb_000141_240 Hb_006355_050 Hb_006355_050 Hb_000083_040--Hb_006355_050 Hb_074238_010 Hb_074238_010 Hb_000083_040--Hb_074238_010 Hb_007177_010 Hb_007177_010 Hb_000083_040--Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_000083_040--Hb_005020_010 Hb_000083_040--Hb_154340_010 Hb_000705_280 Hb_000705_280 Hb_000083_040--Hb_000705_280 Hb_001035_070 Hb_001035_070 Hb_007021_010--Hb_001035_070 Hb_011249_040 Hb_011249_040 Hb_007021_010--Hb_011249_040 Hb_002150_060 Hb_002150_060 Hb_007021_010--Hb_002150_060 Hb_001009_130 Hb_001009_130 Hb_007021_010--Hb_001009_130 Hb_000226_100 Hb_000226_100 Hb_007021_010--Hb_000226_100 Hb_001534_170--Hb_000995_070 Hb_001534_170--Hb_010417_010 Hb_001534_170--Hb_100873_030 Hb_004871_050 Hb_004871_050 Hb_001534_170--Hb_004871_050 Hb_174876_010 Hb_174876_010 Hb_001534_170--Hb_174876_010 Hb_000661_190 Hb_000661_190 Hb_000211_060--Hb_000661_190 Hb_007768_030 Hb_007768_030 Hb_000211_060--Hb_007768_030 Hb_009474_010 Hb_009474_010 Hb_000211_060--Hb_009474_010 Hb_021156_030 Hb_021156_030 Hb_000211_060--Hb_021156_030 Hb_000204_200 Hb_000204_200 Hb_000211_060--Hb_000204_200 Hb_030630_010 Hb_030630_010 Hb_000211_060--Hb_030630_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0120087 0 0 0 0 0.0223312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0215008 0.162258 0 0

CAGE analysis