Hb_005408_060

Information

Type -
Description -
Location Contig5408: 72936-75348
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14200g
description POPTRDRAFT_577157; hypothetical protein
nr
ID XP_012089696.1
description PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00365 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47861: 72995-75348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005408_060 0.0 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
2 Hb_005183_170 0.1514429717 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
3 Hb_004097_120 0.1516999951 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_001882_130 0.1695997047 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
5 Hb_001008_170 0.2037366931 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
6 Hb_001366_310 0.2039938284 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
7 Hb_002478_030 0.2091294863 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
8 Hb_001369_710 0.2118199525 - - PREDICTED: uncharacterized protein LOC105648579 isoform X1 [Jatropha curcas]
9 Hb_003617_020 0.2125639949 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
10 Hb_034585_010 0.216534196 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
11 Hb_003430_060 0.2169992631 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
12 Hb_000291_150 0.2170542445 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
13 Hb_004899_060 0.2179554521 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
14 Hb_003125_170 0.2182399317 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
15 Hb_007735_060 0.2190839445 - - PPase [Hevea brasiliensis]
16 Hb_000933_060 0.2197140335 - - conserved hypothetical protein [Ricinus communis]
17 Hb_140627_020 0.2222045051 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
18 Hb_143766_060 0.2230800313 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
19 Hb_001766_080 0.2245811335 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
20 Hb_000172_100 0.2247606711 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_005408_060 Hb_005408_060 Hb_005183_170 Hb_005183_170 Hb_005408_060--Hb_005183_170 Hb_004097_120 Hb_004097_120 Hb_005408_060--Hb_004097_120 Hb_001882_130 Hb_001882_130 Hb_005408_060--Hb_001882_130 Hb_001008_170 Hb_001008_170 Hb_005408_060--Hb_001008_170 Hb_001366_310 Hb_001366_310 Hb_005408_060--Hb_001366_310 Hb_002478_030 Hb_002478_030 Hb_005408_060--Hb_002478_030 Hb_183610_010 Hb_183610_010 Hb_005183_170--Hb_183610_010 Hb_000984_310 Hb_000984_310 Hb_005183_170--Hb_000984_310 Hb_003617_020 Hb_003617_020 Hb_005183_170--Hb_003617_020 Hb_004117_120 Hb_004117_120 Hb_005183_170--Hb_004117_120 Hb_001486_190 Hb_001486_190 Hb_005183_170--Hb_001486_190 Hb_011671_080 Hb_011671_080 Hb_005183_170--Hb_011671_080 Hb_004097_120--Hb_001882_130 Hb_004097_120--Hb_001008_170 Hb_000661_110 Hb_000661_110 Hb_004097_120--Hb_000661_110 Hb_006185_060 Hb_006185_060 Hb_004097_120--Hb_006185_060 Hb_000479_150 Hb_000479_150 Hb_004097_120--Hb_000479_150 Hb_001221_140 Hb_001221_140 Hb_004097_120--Hb_001221_140 Hb_001882_130--Hb_002478_030 Hb_003939_040 Hb_003939_040 Hb_001882_130--Hb_003939_040 Hb_028472_010 Hb_028472_010 Hb_001882_130--Hb_028472_010 Hb_000635_200 Hb_000635_200 Hb_001882_130--Hb_000635_200 Hb_001882_130--Hb_001221_140 Hb_000739_180 Hb_000739_180 Hb_001008_170--Hb_000739_180 Hb_001008_170--Hb_002478_030 Hb_003894_120 Hb_003894_120 Hb_001008_170--Hb_003894_120 Hb_030827_020 Hb_030827_020 Hb_001008_170--Hb_030827_020 Hb_001257_030 Hb_001257_030 Hb_001008_170--Hb_001257_030 Hb_004449_130 Hb_004449_130 Hb_001008_170--Hb_004449_130 Hb_003544_110 Hb_003544_110 Hb_001366_310--Hb_003544_110 Hb_143766_060 Hb_143766_060 Hb_001366_310--Hb_143766_060 Hb_012490_090 Hb_012490_090 Hb_001366_310--Hb_012490_090 Hb_000976_210 Hb_000976_210 Hb_001366_310--Hb_000976_210 Hb_003494_020 Hb_003494_020 Hb_001366_310--Hb_003494_020 Hb_000392_150 Hb_000392_150 Hb_001366_310--Hb_000392_150 Hb_000684_080 Hb_000684_080 Hb_002478_030--Hb_000684_080 Hb_002478_030--Hb_001257_030 Hb_159809_030 Hb_159809_030 Hb_002478_030--Hb_159809_030 Hb_001488_220 Hb_001488_220 Hb_002478_030--Hb_001488_220 Hb_000634_020 Hb_000634_020 Hb_002478_030--Hb_000634_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.27312 8.9551 2.37765 12.171 3.49308 5.16364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.737296 1.24289 12.8679 2.69403 6.21242

CAGE analysis