Hb_004934_080

Information

Type -
Description -
Location Contig4934: 65585-68997
Sequence    

Annotation

kegg
ID rcu:RCOM_1601200
description Ser/Thr-rich protein T10 in DGCR region, putative
nr
ID XP_012073640.1
description PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
swissprot
ID P54797
description Transport and Golgi organization 2 homolog OS=Mus musculus GN=Tango2 PE=2 SV=1
trembl
ID A0A067KP76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08074 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_080 0.0 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
2 Hb_065182_010 0.3149458247 - - hypothetical protein JCGZ_20878 [Jatropha curcas]
3 Hb_000043_070 0.3212436983 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
4 Hb_023732_040 0.336146298 - - cytochrome P450, putative [Ricinus communis]
5 Hb_007975_040 0.3371844268 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
6 Hb_004052_010 0.3430865997 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
7 Hb_006573_180 0.3452636502 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
8 Hb_001623_210 0.3461289509 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
9 Hb_001943_020 0.3480523468 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
10 Hb_183672_010 0.3515006939 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
11 Hb_000141_240 0.3590871066 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
12 Hb_001267_030 0.3619773302 - - hypothetical protein VITISV_041979 [Vitis vinifera]
13 Hb_001235_080 0.3642306032 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000213_080 0.3740548361 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
15 Hb_001277_090 0.3783038692 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
16 Hb_007336_030 0.3809114314 - - -
17 Hb_001638_210 0.3811309221 - - conserved hypothetical protein [Ricinus communis]
18 Hb_028977_020 0.3813321488 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
19 Hb_004460_010 0.3816030736 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
20 Hb_088538_020 0.3820967549 - - hypothetical protein JCGZ_12178 [Jatropha curcas]

Gene co-expression network

sample Hb_004934_080 Hb_004934_080 Hb_065182_010 Hb_065182_010 Hb_004934_080--Hb_065182_010 Hb_000043_070 Hb_000043_070 Hb_004934_080--Hb_000043_070 Hb_023732_040 Hb_023732_040 Hb_004934_080--Hb_023732_040 Hb_007975_040 Hb_007975_040 Hb_004934_080--Hb_007975_040 Hb_004052_010 Hb_004052_010 Hb_004934_080--Hb_004052_010 Hb_006573_180 Hb_006573_180 Hb_004934_080--Hb_006573_180 Hb_042778_010 Hb_042778_010 Hb_065182_010--Hb_042778_010 Hb_007336_030 Hb_007336_030 Hb_065182_010--Hb_007336_030 Hb_000802_120 Hb_000802_120 Hb_065182_010--Hb_000802_120 Hb_001387_030 Hb_001387_030 Hb_065182_010--Hb_001387_030 Hb_000363_440 Hb_000363_440 Hb_065182_010--Hb_000363_440 Hb_006153_080 Hb_006153_080 Hb_000043_070--Hb_006153_080 Hb_000579_020 Hb_000579_020 Hb_000043_070--Hb_000579_020 Hb_001277_090 Hb_001277_090 Hb_000043_070--Hb_001277_090 Hb_002150_060 Hb_002150_060 Hb_000043_070--Hb_002150_060 Hb_005569_020 Hb_005569_020 Hb_000043_070--Hb_005569_020 Hb_001946_410 Hb_001946_410 Hb_000043_070--Hb_001946_410 Hb_000477_080 Hb_000477_080 Hb_023732_040--Hb_000477_080 Hb_000172_570 Hb_000172_570 Hb_023732_040--Hb_000172_570 Hb_023732_040--Hb_001277_090 Hb_004460_010 Hb_004460_010 Hb_023732_040--Hb_004460_010 Hb_009314_010 Hb_009314_010 Hb_023732_040--Hb_009314_010 Hb_000094_130 Hb_000094_130 Hb_023732_040--Hb_000094_130 Hb_000440_030 Hb_000440_030 Hb_007975_040--Hb_000440_030 Hb_154340_010 Hb_154340_010 Hb_007975_040--Hb_154340_010 Hb_000120_690 Hb_000120_690 Hb_007975_040--Hb_000120_690 Hb_004316_090 Hb_004316_090 Hb_007975_040--Hb_004316_090 Hb_074238_010 Hb_074238_010 Hb_007975_040--Hb_074238_010 Hb_000226_100 Hb_000226_100 Hb_007975_040--Hb_000226_100 Hb_004052_010--Hb_001277_090 Hb_000141_030 Hb_000141_030 Hb_004052_010--Hb_000141_030 Hb_004052_010--Hb_000172_570 Hb_004052_010--Hb_006153_080 Hb_004052_010--Hb_005569_020 Hb_000712_050 Hb_000712_050 Hb_004052_010--Hb_000712_050 Hb_002046_070 Hb_002046_070 Hb_006573_180--Hb_002046_070 Hb_004032_260 Hb_004032_260 Hb_006573_180--Hb_004032_260 Hb_012053_060 Hb_012053_060 Hb_006573_180--Hb_012053_060 Hb_006573_180--Hb_000141_030 Hb_006573_180--Hb_000172_570 Hb_006573_180--Hb_023732_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0302473 0.0125347 0.0112667 0.0121863 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0344845 0 0.152378 0 0

CAGE analysis