Hb_000363_440

Information

Type -
Description -
Location Contig363: 389629-391900
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_440 0.0 - - -
2 Hb_000362_220 0.2563844713 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
3 Hb_022132_040 0.2658935616 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
4 Hb_005702_030 0.2721366048 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
5 Hb_000457_170 0.2789159375 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
6 Hb_017434_060 0.2813176674 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
7 Hb_000050_090 0.286108849 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
8 Hb_026698_010 0.2938519533 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
9 Hb_000703_240 0.2940388676 - - -
10 Hb_054328_010 0.2959393029 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
11 Hb_004738_020 0.3011488643 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001959_040 0.3111216008 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
13 Hb_005565_010 0.3137834184 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
14 Hb_004225_180 0.3138515319 - - bel1 homeotic protein, putative [Ricinus communis]
15 Hb_005396_070 0.31801467 - - hypothetical protein EUGRSUZ_B03067 [Eucalyptus grandis]
16 Hb_005396_050 0.320021763 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
17 Hb_000050_100 0.3204758096 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
18 Hb_010407_070 0.3237494089 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
19 Hb_000261_490 0.3269318412 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
20 Hb_000665_030 0.3283257323 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_440 Hb_000363_440 Hb_000362_220 Hb_000362_220 Hb_000363_440--Hb_000362_220 Hb_022132_040 Hb_022132_040 Hb_000363_440--Hb_022132_040 Hb_005702_030 Hb_005702_030 Hb_000363_440--Hb_005702_030 Hb_000457_170 Hb_000457_170 Hb_000363_440--Hb_000457_170 Hb_017434_060 Hb_017434_060 Hb_000363_440--Hb_017434_060 Hb_000050_090 Hb_000050_090 Hb_000363_440--Hb_000050_090 Hb_001060_110 Hb_001060_110 Hb_000362_220--Hb_001060_110 Hb_005288_200 Hb_005288_200 Hb_000362_220--Hb_005288_200 Hb_003321_010 Hb_003321_010 Hb_000362_220--Hb_003321_010 Hb_001277_270 Hb_001277_270 Hb_000362_220--Hb_001277_270 Hb_000362_220--Hb_017434_060 Hb_000703_240 Hb_000703_240 Hb_000362_220--Hb_000703_240 Hb_108706_010 Hb_108706_010 Hb_022132_040--Hb_108706_010 Hb_120155_010 Hb_120155_010 Hb_022132_040--Hb_120155_010 Hb_000061_390 Hb_000061_390 Hb_022132_040--Hb_000061_390 Hb_022132_040--Hb_000362_220 Hb_001959_040 Hb_001959_040 Hb_022132_040--Hb_001959_040 Hb_005702_030--Hb_017434_060 Hb_005702_030--Hb_000050_090 Hb_011344_170 Hb_011344_170 Hb_005702_030--Hb_011344_170 Hb_005702_030--Hb_000703_240 Hb_007307_030 Hb_007307_030 Hb_005702_030--Hb_007307_030 Hb_001769_010 Hb_001769_010 Hb_005702_030--Hb_001769_010 Hb_000261_490 Hb_000261_490 Hb_000457_170--Hb_000261_490 Hb_005843_100 Hb_005843_100 Hb_000457_170--Hb_005843_100 Hb_026698_010 Hb_026698_010 Hb_000457_170--Hb_026698_010 Hb_005396_050 Hb_005396_050 Hb_000457_170--Hb_005396_050 Hb_146464_010 Hb_146464_010 Hb_000457_170--Hb_146464_010 Hb_000497_180 Hb_000497_180 Hb_000457_170--Hb_000497_180 Hb_017434_060--Hb_007307_030 Hb_011311_020 Hb_011311_020 Hb_017434_060--Hb_011311_020 Hb_002007_240 Hb_002007_240 Hb_017434_060--Hb_002007_240 Hb_000987_140 Hb_000987_140 Hb_017434_060--Hb_000987_140 Hb_017434_060--Hb_011344_170 Hb_000050_100 Hb_000050_100 Hb_000050_090--Hb_000050_100 Hb_017987_090 Hb_017987_090 Hb_000050_090--Hb_017987_090 Hb_000703_060 Hb_000703_060 Hb_000050_090--Hb_000703_060 Hb_000050_090--Hb_000703_240 Hb_000050_090--Hb_011344_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0661322 0.110266 0 0 0.0247261 0.0307219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0605561 0 0.0867565 0.0192233 0

CAGE analysis