Hb_001959_040

Information

Type -
Description -
Location Contig1959: 48520-51455
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07340g
description POPTRDRAFT_229995; hypothetical protein
nr
ID XP_012077650.1
description PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LIR6
description Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1
trembl
ID A0A067KM53
description Beta-amylase OS=Jatropha curcas GN=JCGZ_12909 PE=3 SV=1
Gene Ontology
ID GO:0005634
description beta-amylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19621: 48520-51244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_040 0.0 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
2 Hb_000005_330 0.1483355916 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
3 Hb_000261_440 0.1683591597 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_001587_190 0.187705695 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
5 Hb_004225_180 0.1880857723 - - bel1 homeotic protein, putative [Ricinus communis]
6 Hb_022092_120 0.1902709989 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
7 Hb_001047_120 0.1922394154 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
8 Hb_004738_020 0.1940646454 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005396_050 0.2029502244 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
10 Hb_000665_030 0.2031579477 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
11 Hb_006452_030 0.2068085825 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000221_210 0.2085784015 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
13 Hb_004310_030 0.2091435366 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
14 Hb_000109_240 0.2116487558 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
15 Hb_000086_060 0.212341198 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
16 Hb_005215_030 0.2126348618 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
17 Hb_002235_400 0.2127827995 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
18 Hb_001150_040 0.2128553953 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
19 Hb_011689_040 0.2137873304 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
20 Hb_004055_010 0.2155734827 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001959_040 Hb_001959_040 Hb_000005_330 Hb_000005_330 Hb_001959_040--Hb_000005_330 Hb_000261_440 Hb_000261_440 Hb_001959_040--Hb_000261_440 Hb_001587_190 Hb_001587_190 Hb_001959_040--Hb_001587_190 Hb_004225_180 Hb_004225_180 Hb_001959_040--Hb_004225_180 Hb_022092_120 Hb_022092_120 Hb_001959_040--Hb_022092_120 Hb_001047_120 Hb_001047_120 Hb_001959_040--Hb_001047_120 Hb_000005_330--Hb_022092_120 Hb_000049_120 Hb_000049_120 Hb_000005_330--Hb_000049_120 Hb_000005_330--Hb_000261_440 Hb_005215_030 Hb_005215_030 Hb_000005_330--Hb_005215_030 Hb_000589_270 Hb_000589_270 Hb_000005_330--Hb_000589_270 Hb_020178_070 Hb_020178_070 Hb_000005_330--Hb_020178_070 Hb_000086_060 Hb_000086_060 Hb_000261_440--Hb_000086_060 Hb_007666_020 Hb_007666_020 Hb_000261_440--Hb_007666_020 Hb_000261_440--Hb_022092_120 Hb_021254_030 Hb_021254_030 Hb_000261_440--Hb_021254_030 Hb_003151_050 Hb_003151_050 Hb_000261_440--Hb_003151_050 Hb_000709_060 Hb_000709_060 Hb_001587_190--Hb_000709_060 Hb_004108_080 Hb_004108_080 Hb_001587_190--Hb_004108_080 Hb_005329_020 Hb_005329_020 Hb_001587_190--Hb_005329_020 Hb_001248_050 Hb_001248_050 Hb_001587_190--Hb_001248_050 Hb_000329_650 Hb_000329_650 Hb_001587_190--Hb_000329_650 Hb_009158_030 Hb_009158_030 Hb_001587_190--Hb_009158_030 Hb_026698_010 Hb_026698_010 Hb_004225_180--Hb_026698_010 Hb_010407_070 Hb_010407_070 Hb_004225_180--Hb_010407_070 Hb_006189_010 Hb_006189_010 Hb_004225_180--Hb_006189_010 Hb_011472_040 Hb_011472_040 Hb_004225_180--Hb_011472_040 Hb_007849_040 Hb_007849_040 Hb_004225_180--Hb_007849_040 Hb_003978_010 Hb_003978_010 Hb_004225_180--Hb_003978_010 Hb_000221_210 Hb_000221_210 Hb_022092_120--Hb_000221_210 Hb_000395_080 Hb_000395_080 Hb_022092_120--Hb_000395_080 Hb_005396_050 Hb_005396_050 Hb_022092_120--Hb_005396_050 Hb_000237_080 Hb_000237_080 Hb_022092_120--Hb_000237_080 Hb_002137_020 Hb_002137_020 Hb_022092_120--Hb_002137_020 Hb_010931_120 Hb_010931_120 Hb_001047_120--Hb_010931_120 Hb_000260_220 Hb_000260_220 Hb_001047_120--Hb_000260_220 Hb_000202_040 Hb_000202_040 Hb_001047_120--Hb_000202_040 Hb_005993_020 Hb_005993_020 Hb_001047_120--Hb_005993_020 Hb_002374_050 Hb_002374_050 Hb_001047_120--Hb_002374_050 Hb_004055_030 Hb_004055_030 Hb_001047_120--Hb_004055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
561.244 381.524 56.2525 87.1424 152.871 253.188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
859.237 116.482 344.43 244.881 19.4717

CAGE analysis