Hb_001047_120

Information

Type transcription factor
Description TF Family: PHD
Location Contig1047: 70472-80313
Sequence    

Annotation

kegg
ID rcu:RCOM_0557280
description hypothetical protein
nr
ID XP_012092219.1
description PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067JPH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21915 PE=4 SV=1
Gene Ontology
ID GO:0003677
description acyl- n-acyltransferase with ring fyve phd-type zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01615: 76931-77801 , PASA_asmbl_01616: 78073-78372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_120 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
2 Hb_010931_120 0.1097238121 - - myosin heavy chain-related family protein [Populus trichocarpa]
3 Hb_000260_220 0.1180767344 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_000202_040 0.1289610232 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
5 Hb_005993_020 0.1304737766 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
6 Hb_002374_050 0.1308510872 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
7 Hb_004055_030 0.1367057448 - - casein kinase, putative [Ricinus communis]
8 Hb_001936_020 0.1369052227 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
9 Hb_001124_160 0.1370638092 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
10 Hb_006922_100 0.137951557 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
11 Hb_106724_020 0.138159887 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
12 Hb_000445_420 0.1389236146 - - protein transporter, putative [Ricinus communis]
13 Hb_000483_360 0.1390793076 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
14 Hb_011671_430 0.1392909783 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
15 Hb_004310_030 0.1405387625 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
16 Hb_002131_020 0.1410869902 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
17 Hb_001771_140 0.1419255139 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
18 Hb_007894_140 0.1427836427 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
19 Hb_000020_190 0.1441369457 - - hypothetical protein RCOM_0452240 [Ricinus communis]
20 Hb_016657_010 0.1451877596 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001047_120 Hb_001047_120 Hb_010931_120 Hb_010931_120 Hb_001047_120--Hb_010931_120 Hb_000260_220 Hb_000260_220 Hb_001047_120--Hb_000260_220 Hb_000202_040 Hb_000202_040 Hb_001047_120--Hb_000202_040 Hb_005993_020 Hb_005993_020 Hb_001047_120--Hb_005993_020 Hb_002374_050 Hb_002374_050 Hb_001047_120--Hb_002374_050 Hb_004055_030 Hb_004055_030 Hb_001047_120--Hb_004055_030 Hb_010931_120--Hb_004055_030 Hb_011671_430 Hb_011671_430 Hb_010931_120--Hb_011671_430 Hb_000445_420 Hb_000445_420 Hb_010931_120--Hb_000445_420 Hb_010931_120--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_010931_120--Hb_002131_020 Hb_010931_120--Hb_000260_220 Hb_000031_220 Hb_000031_220 Hb_000260_220--Hb_000031_220 Hb_002054_040 Hb_002054_040 Hb_000260_220--Hb_002054_040 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_005054_230 Hb_005054_230 Hb_000202_040--Hb_005054_230 Hb_001049_090 Hb_001049_090 Hb_000202_040--Hb_001049_090 Hb_000930_030 Hb_000930_030 Hb_000202_040--Hb_000930_030 Hb_062135_030 Hb_062135_030 Hb_000202_040--Hb_062135_030 Hb_000521_080 Hb_000521_080 Hb_000202_040--Hb_000521_080 Hb_002234_180 Hb_002234_180 Hb_000202_040--Hb_002234_180 Hb_001680_010 Hb_001680_010 Hb_005993_020--Hb_001680_010 Hb_005993_020--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_005993_020--Hb_001301_200 Hb_005993_020--Hb_011671_430 Hb_005532_050 Hb_005532_050 Hb_005993_020--Hb_005532_050 Hb_000630_050 Hb_000630_050 Hb_005993_020--Hb_000630_050 Hb_006114_030 Hb_006114_030 Hb_002374_050--Hb_006114_030 Hb_002374_050--Hb_002054_040 Hb_004689_050 Hb_004689_050 Hb_002374_050--Hb_004689_050 Hb_001124_160 Hb_001124_160 Hb_002374_050--Hb_001124_160 Hb_100215_010 Hb_100215_010 Hb_002374_050--Hb_100215_010 Hb_006922_100 Hb_006922_100 Hb_004055_030--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_004055_030--Hb_007441_120 Hb_004055_030--Hb_001124_160 Hb_003813_130 Hb_003813_130 Hb_004055_030--Hb_003813_130 Hb_004055_030--Hb_000445_420 Hb_001199_020 Hb_001199_020 Hb_004055_030--Hb_001199_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0394 0.707089 0.290793 0.496293 0.695611 0.741516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55581 0.229576 0.790032 0.564437 0.403481

CAGE analysis