Hb_004545_040

Information

Type -
Description -
Location Contig4545: 40313-47855
Sequence    

Annotation

kegg
ID rcu:RCOM_1429420
description hypothetical protein
nr
ID XP_012089161.1
description PREDICTED: coiled-coil domain-containing protein SCD2-like [Jatropha curcas]
swissprot
ID Q8RWD5
description Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana GN=SCD2 PE=1 SV=1
trembl
ID B9REW8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43374: 44965-45816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_040 0.0 - - PREDICTED: coiled-coil domain-containing protein SCD2-like [Jatropha curcas]
2 Hb_003740_020 0.1230971185 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_000689_050 0.1352347017 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000581_030 0.1394068694 - - conserved hypothetical protein [Ricinus communis]
5 Hb_021409_070 0.1499703468 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
6 Hb_002518_090 0.1537661008 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
7 Hb_000527_080 0.1552487589 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
8 Hb_008025_010 0.1559847775 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
9 Hb_004545_080 0.1562041097 - - protein with unknown function [Ricinus communis]
10 Hb_003050_360 0.1586777488 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
11 Hb_006120_060 0.1589708365 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
12 Hb_022693_110 0.1600099045 - - phosphate transporter [Manihot esculenta]
13 Hb_000327_360 0.1616793567 - - unnamed protein product [Coffea canephora]
14 Hb_013405_070 0.162718096 - - ferric-chelate reductase, putative [Ricinus communis]
15 Hb_000406_030 0.1627932656 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
16 Hb_012180_060 0.1631227672 - - peptidase, putative [Ricinus communis]
17 Hb_000206_230 0.16525501 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000310_120 0.1655214831 - - PREDICTED: probable transaldolase [Jatropha curcas]
19 Hb_011174_040 0.1670533118 - - conserved hypothetical protein [Ricinus communis]
20 Hb_172706_020 0.1680868141 - - PREDICTED: protein ABIL2 [Jatropha curcas]

Gene co-expression network

sample Hb_004545_040 Hb_004545_040 Hb_003740_020 Hb_003740_020 Hb_004545_040--Hb_003740_020 Hb_000689_050 Hb_000689_050 Hb_004545_040--Hb_000689_050 Hb_000581_030 Hb_000581_030 Hb_004545_040--Hb_000581_030 Hb_021409_070 Hb_021409_070 Hb_004545_040--Hb_021409_070 Hb_002518_090 Hb_002518_090 Hb_004545_040--Hb_002518_090 Hb_000527_080 Hb_000527_080 Hb_004545_040--Hb_000527_080 Hb_005357_110 Hb_005357_110 Hb_003740_020--Hb_005357_110 Hb_029253_010 Hb_029253_010 Hb_003740_020--Hb_029253_010 Hb_003740_020--Hb_021409_070 Hb_005511_130 Hb_005511_130 Hb_003740_020--Hb_005511_130 Hb_004730_020 Hb_004730_020 Hb_003740_020--Hb_004730_020 Hb_000032_410 Hb_000032_410 Hb_003740_020--Hb_000032_410 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_004545_080 Hb_004545_080 Hb_000689_050--Hb_004545_080 Hb_000003_030 Hb_000003_030 Hb_000581_030--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_000581_030--Hb_019654_060 Hb_000940_210 Hb_000940_210 Hb_000581_030--Hb_000940_210 Hb_000237_020 Hb_000237_020 Hb_000581_030--Hb_000237_020 Hb_004032_210 Hb_004032_210 Hb_000581_030--Hb_004032_210 Hb_000581_030--Hb_003740_020 Hb_000566_010 Hb_000566_010 Hb_021409_070--Hb_000566_010 Hb_003680_220 Hb_003680_220 Hb_021409_070--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_021409_070--Hb_000007_090 Hb_005665_090 Hb_005665_090 Hb_021409_070--Hb_005665_090 Hb_000414_080 Hb_000414_080 Hb_021409_070--Hb_000414_080 Hb_172706_020 Hb_172706_020 Hb_002518_090--Hb_172706_020 Hb_002518_090--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_002518_090--Hb_023226_030 Hb_000220_110 Hb_000220_110 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_000309_030 Hb_000309_030 Hb_002518_090--Hb_000309_030 Hb_000527_080--Hb_004545_080 Hb_000527_080--Hb_004730_020 Hb_001450_040 Hb_001450_040 Hb_000527_080--Hb_001450_040 Hb_000527_080--Hb_000689_050 Hb_003894_030 Hb_003894_030 Hb_000527_080--Hb_003894_030 Hb_000527_080--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118385 0.0847444 0.608346 0.638168 0.026834 0.0832086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0424303 0.150237 0.0317014 0.325252 0.388681

CAGE analysis