Hb_003092_060

Information

Type -
Description -
Location Contig3092: 99112-105029
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06250g
description hypothetical protein
nr
ID AGL44397.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q949Y3
description Bifunctional purple acid phosphatase 26 OS=Arabidopsis thaliana GN=PAP26 PE=1 SV=1
trembl
ID V9NC36
description Purple acid phosphatase OS=Manihot esculenta GN=PAP26-2 PE=2 SV=1
Gene Ontology
ID GO:0003993
description bifunctional purple acid phosphatase 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32682: 99083-104831 , PASA_asmbl_32683: 99083-104831 , PASA_asmbl_32684: 99254-99913 , PASA_asmbl_32686: 100828-101104
cDNA
(Sanger)
(ID:Location)		 048_G10.ab1: 102060-104828 , 048_L11.ab1: 102058-104828

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003092_060 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_012799_140 0.1058255791 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
3 Hb_000418_010 0.1172988129 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
4 Hb_012239_030 0.1202719749 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_001489_100 0.1244695813 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
6 Hb_000671_080 0.1281964479 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
7 Hb_001205_110 0.1309482593 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
8 Hb_004994_090 0.1312162082 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
9 Hb_000069_480 0.1312429668 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006573_210 0.1328981919 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
11 Hb_003599_030 0.1348010632 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
12 Hb_005215_020 0.1351427105 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
13 Hb_000656_150 0.1383173689 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
14 Hb_008937_010 0.141086084 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
15 Hb_000580_030 0.1412057843 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
16 Hb_000059_020 0.1429728816 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
17 Hb_000802_090 0.1454480177 - - ornithine aminotransferase, putative [Ricinus communis]
18 Hb_000258_110 0.1460048427 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
19 Hb_003120_080 0.1462497032 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
20 Hb_000020_160 0.1463076961 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_003092_060 Hb_003092_060 Hb_012799_140 Hb_012799_140 Hb_003092_060--Hb_012799_140 Hb_000418_010 Hb_000418_010 Hb_003092_060--Hb_000418_010 Hb_012239_030 Hb_012239_030 Hb_003092_060--Hb_012239_030 Hb_001489_100 Hb_001489_100 Hb_003092_060--Hb_001489_100 Hb_000671_080 Hb_000671_080 Hb_003092_060--Hb_000671_080 Hb_001205_110 Hb_001205_110 Hb_003092_060--Hb_001205_110 Hb_012799_140--Hb_001489_100 Hb_000174_150 Hb_000174_150 Hb_012799_140--Hb_000174_150 Hb_000059_020 Hb_000059_020 Hb_012799_140--Hb_000059_020 Hb_000069_480 Hb_000069_480 Hb_012799_140--Hb_000069_480 Hb_012799_140--Hb_000418_010 Hb_002477_250 Hb_002477_250 Hb_012799_140--Hb_002477_250 Hb_000197_030 Hb_000197_030 Hb_000418_010--Hb_000197_030 Hb_000418_010--Hb_000069_480 Hb_000418_010--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_000418_010--Hb_001257_100 Hb_000418_010--Hb_001489_100 Hb_006198_020 Hb_006198_020 Hb_000418_010--Hb_006198_020 Hb_012239_030--Hb_001205_110 Hb_000139_130 Hb_000139_130 Hb_012239_030--Hb_000139_130 Hb_008749_030 Hb_008749_030 Hb_012239_030--Hb_008749_030 Hb_010697_040 Hb_010697_040 Hb_012239_030--Hb_010697_040 Hb_000352_070 Hb_000352_070 Hb_012239_030--Hb_000352_070 Hb_080451_010 Hb_080451_010 Hb_012239_030--Hb_080451_010 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_000671_080--Hb_001257_100 Hb_003599_030 Hb_003599_030 Hb_000671_080--Hb_003599_030 Hb_024650_080 Hb_024650_080 Hb_000671_080--Hb_024650_080 Hb_003849_220 Hb_003849_220 Hb_000671_080--Hb_003849_220 Hb_000926_150 Hb_000926_150 Hb_000671_080--Hb_000926_150 Hb_001205_110--Hb_010697_040 Hb_001205_110--Hb_008749_030 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_002213_040 Hb_002213_040 Hb_001205_110--Hb_002213_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.544 32.8478 13.9971 34.298 16.2205 9.74738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9809 3.75291 6.5156 18.4082 12.6844

CAGE analysis