Hb_002811_070

Information

Type -
Description -
Location Contig2811: 69858-70837
Sequence    

Annotation

kegg
ID tcc:TCM_026406
description Cytidine/deoxycytidylate deaminase family protein isoform 1
nr
ID XP_007030638.1
description Cytidine/deoxycytidylate deaminase family protein isoform 1 [Theobroma cacao]
swissprot
ID O34598
description Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1
trembl
ID A0A061F1D0
description Cytidine/deoxycytidylate deaminase family protein isoform 1 OS=Theobroma cacao GN=TCM_026406 PE=4 SV=1
Gene Ontology
ID GO:0008270
description cytidine deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_070 0.0 - - Cytidine/deoxycytidylate deaminase family protein isoform 1 [Theobroma cacao]
2 Hb_002228_120 0.1638765477 - - potassium channel beta, putative [Ricinus communis]
3 Hb_003055_160 0.1702892235 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
4 Hb_000487_130 0.1709682689 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
5 Hb_007290_040 0.1839779002 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]
6 Hb_001153_040 0.1855747766 - - PREDICTED: uncharacterized protein LOC105128973 [Populus euphratica]
7 Hb_135592_010 0.1861721369 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005666_010 0.1870545934 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
9 Hb_000413_120 0.1872903564 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
10 Hb_087717_010 0.1874234243 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
11 Hb_004933_010 0.191049369 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
12 Hb_004690_020 0.192479925 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
13 Hb_001369_490 0.1936437057 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
14 Hb_123713_010 0.1970148416 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_001091_060 0.1989457248 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
16 Hb_000742_040 0.2010740076 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
17 Hb_000357_140 0.2011689565 - - hypothetical protein JCGZ_15089 [Jatropha curcas]
18 Hb_017908_010 0.2029211235 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001673_090 0.2050309162 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
20 Hb_012675_010 0.2054593466 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002811_070 Hb_002811_070 Hb_002228_120 Hb_002228_120 Hb_002811_070--Hb_002228_120 Hb_003055_160 Hb_003055_160 Hb_002811_070--Hb_003055_160 Hb_000487_130 Hb_000487_130 Hb_002811_070--Hb_000487_130 Hb_007290_040 Hb_007290_040 Hb_002811_070--Hb_007290_040 Hb_001153_040 Hb_001153_040 Hb_002811_070--Hb_001153_040 Hb_135592_010 Hb_135592_010 Hb_002811_070--Hb_135592_010 Hb_000413_120 Hb_000413_120 Hb_002228_120--Hb_000413_120 Hb_004933_010 Hb_004933_010 Hb_002228_120--Hb_004933_010 Hb_009662_040 Hb_009662_040 Hb_002228_120--Hb_009662_040 Hb_009367_070 Hb_009367_070 Hb_002228_120--Hb_009367_070 Hb_034713_010 Hb_034713_010 Hb_002228_120--Hb_034713_010 Hb_140627_040 Hb_140627_040 Hb_002228_120--Hb_140627_040 Hb_123713_010 Hb_123713_010 Hb_003055_160--Hb_123713_010 Hb_004724_280 Hb_004724_280 Hb_003055_160--Hb_004724_280 Hb_001856_210 Hb_001856_210 Hb_003055_160--Hb_001856_210 Hb_000089_090 Hb_000089_090 Hb_003055_160--Hb_000089_090 Hb_105377_010 Hb_105377_010 Hb_003055_160--Hb_105377_010 Hb_001123_330 Hb_001123_330 Hb_003055_160--Hb_001123_330 Hb_025193_010 Hb_025193_010 Hb_000487_130--Hb_025193_010 Hb_000152_730 Hb_000152_730 Hb_000487_130--Hb_000152_730 Hb_004235_040 Hb_004235_040 Hb_000487_130--Hb_004235_040 Hb_001369_490 Hb_001369_490 Hb_000487_130--Hb_001369_490 Hb_026196_020 Hb_026196_020 Hb_000487_130--Hb_026196_020 Hb_002999_020 Hb_002999_020 Hb_000487_130--Hb_002999_020 Hb_004319_010 Hb_004319_010 Hb_007290_040--Hb_004319_010 Hb_005211_170 Hb_005211_170 Hb_007290_040--Hb_005211_170 Hb_002307_150 Hb_002307_150 Hb_007290_040--Hb_002307_150 Hb_000445_260 Hb_000445_260 Hb_007290_040--Hb_000445_260 Hb_001136_080 Hb_001136_080 Hb_007290_040--Hb_001136_080 Hb_000333_140 Hb_000333_140 Hb_007290_040--Hb_000333_140 Hb_048476_130 Hb_048476_130 Hb_001153_040--Hb_048476_130 Hb_017908_010 Hb_017908_010 Hb_001153_040--Hb_017908_010 Hb_001153_040--Hb_004933_010 Hb_001153_040--Hb_000413_120 Hb_006483_070 Hb_006483_070 Hb_001153_040--Hb_006483_070 Hb_000742_290 Hb_000742_290 Hb_001153_040--Hb_000742_290 Hb_000141_050 Hb_000141_050 Hb_135592_010--Hb_000141_050 Hb_013394_110 Hb_013394_110 Hb_135592_010--Hb_013394_110 Hb_012675_010 Hb_012675_010 Hb_135592_010--Hb_012675_010 Hb_087717_010 Hb_087717_010 Hb_135592_010--Hb_087717_010 Hb_005666_010 Hb_005666_010 Hb_135592_010--Hb_005666_010 Hb_188742_010 Hb_188742_010 Hb_135592_010--Hb_188742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.077249 0.0287597 1.39024 3.31634 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.062002 0.221723 0.025207 0.122901

CAGE analysis