Hb_002783_160

Information

Type -
Description -
Location Contig2783: 174217-181306
Sequence    

Annotation

kegg
ID pmum:103321242
description putative E3 ubiquitin-protein ligase LIN-1
nr
ID XP_012073789.1
description PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
swissprot
ID C6L7U1
description Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2
trembl
ID A0A061EZ85
description Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_021979 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase lin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29050: 179022-179554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_160 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
2 Hb_006569_030 0.1913761744 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
3 Hb_000329_060 0.2010148429 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
4 Hb_001476_060 0.2015163007 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
5 Hb_028872_110 0.2028446028 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
6 Hb_001332_040 0.2037963564 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
7 Hb_005147_030 0.2039952204 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
8 Hb_001009_080 0.2042423059 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002811_030 0.205293309 - - PREDICTED: cysteine synthase [Jatropha curcas]
10 Hb_019053_030 0.2055507731 - - PREDICTED: sulfite oxidase [Jatropha curcas]
11 Hb_000676_190 0.2073475769 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
12 Hb_001104_100 0.2073672699 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
13 Hb_000903_060 0.2076702513 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
14 Hb_000181_050 0.2080170554 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
15 Hb_004096_050 0.2085712801 - - hypothetical protein B456_006G229700 [Gossypium raimondii]
16 Hb_003226_120 0.2100499657 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001232_010 0.2105426785 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
18 Hb_002675_140 0.2114337468 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
19 Hb_058620_070 0.2120895485 - - unnamed protein product [Chondrus crispus]
20 Hb_172112_020 0.2124907059 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]

Gene co-expression network

sample Hb_002783_160 Hb_002783_160 Hb_006569_030 Hb_006569_030 Hb_002783_160--Hb_006569_030 Hb_000329_060 Hb_000329_060 Hb_002783_160--Hb_000329_060 Hb_001476_060 Hb_001476_060 Hb_002783_160--Hb_001476_060 Hb_028872_110 Hb_028872_110 Hb_002783_160--Hb_028872_110 Hb_001332_040 Hb_001332_040 Hb_002783_160--Hb_001332_040 Hb_005147_030 Hb_005147_030 Hb_002783_160--Hb_005147_030 Hb_002217_030 Hb_002217_030 Hb_006569_030--Hb_002217_030 Hb_009079_030 Hb_009079_030 Hb_006569_030--Hb_009079_030 Hb_001473_180 Hb_001473_180 Hb_006569_030--Hb_001473_180 Hb_002681_090 Hb_002681_090 Hb_006569_030--Hb_002681_090 Hb_001235_140 Hb_001235_140 Hb_006569_030--Hb_001235_140 Hb_004787_080 Hb_004787_080 Hb_006569_030--Hb_004787_080 Hb_000556_120 Hb_000556_120 Hb_000329_060--Hb_000556_120 Hb_000381_120 Hb_000381_120 Hb_000329_060--Hb_000381_120 Hb_000140_290 Hb_000140_290 Hb_000329_060--Hb_000140_290 Hb_005634_010 Hb_005634_010 Hb_000329_060--Hb_005634_010 Hb_005357_160 Hb_005357_160 Hb_000329_060--Hb_005357_160 Hb_000836_460 Hb_000836_460 Hb_000329_060--Hb_000836_460 Hb_004429_090 Hb_004429_090 Hb_001476_060--Hb_004429_090 Hb_002675_140 Hb_002675_140 Hb_001476_060--Hb_002675_140 Hb_001369_250 Hb_001369_250 Hb_001476_060--Hb_001369_250 Hb_001104_230 Hb_001104_230 Hb_001476_060--Hb_001104_230 Hb_000034_070 Hb_000034_070 Hb_001476_060--Hb_000034_070 Hb_001104_100 Hb_001104_100 Hb_001476_060--Hb_001104_100 Hb_028872_110--Hb_001104_230 Hb_001157_200 Hb_001157_200 Hb_028872_110--Hb_001157_200 Hb_000159_120 Hb_000159_120 Hb_028872_110--Hb_000159_120 Hb_003906_170 Hb_003906_170 Hb_028872_110--Hb_003906_170 Hb_008226_070 Hb_008226_070 Hb_028872_110--Hb_008226_070 Hb_003226_120 Hb_003226_120 Hb_028872_110--Hb_003226_120 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_001332_040--Hb_000621_020 Hb_001332_040--Hb_004429_090 Hb_002471_290 Hb_002471_290 Hb_005147_030--Hb_002471_290 Hb_005147_030--Hb_001473_180 Hb_002600_150 Hb_002600_150 Hb_005147_030--Hb_002600_150 Hb_005147_030--Hb_009079_030 Hb_005147_030--Hb_000329_060 Hb_002044_150 Hb_002044_150 Hb_005147_030--Hb_002044_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0752984 0.0140698 0.0584863 0.0954593 0.115906 0.0328186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120001 0.050852 0.0559067 0.273179 0.0467923

CAGE analysis