Hb_002681_210

Information

Type -
Description -
Location Contig2681: 153583-153963
Sequence    

Annotation

kegg
ID rcu:RCOM_0532650
description hypothetical protein
nr
ID XP_012071714.1
description PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SLV4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0532650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27939: 147401-152713 , PASA_asmbl_27940: 153237-153454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_210 0.0 - - PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
2 Hb_004650_050 0.1138627578 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
3 Hb_019654_180 0.1204326938 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
4 Hb_000049_100 0.1216455185 - - Photosystem II reaction center W protein, putative [Ricinus communis]
5 Hb_017434_040 0.1259389298 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
6 Hb_009838_070 0.1261315738 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
7 Hb_003777_140 0.1261378006 - - conserved hypothetical protein [Ricinus communis]
8 Hb_033187_010 0.1357614659 - - epoxide hydrolase, putative [Ricinus communis]
9 Hb_011282_040 0.1360777906 - - Sec14 cytosolic factor, putative [Ricinus communis]
10 Hb_001534_060 0.1362157738 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
11 Hb_003120_020 0.138921698 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
12 Hb_005000_110 0.1390045016 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
13 Hb_000711_030 0.1399231701 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
14 Hb_004096_210 0.1402507601 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
15 Hb_029920_010 0.1420423258 - - pepsin A, putative [Ricinus communis]
16 Hb_007597_030 0.1423866278 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002387_010 0.1427934615 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
18 Hb_000816_240 0.1436485666 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
19 Hb_166718_010 0.1436648321 - - heat-shock protein, putative [Ricinus communis]
20 Hb_003913_120 0.1443427369 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]

Gene co-expression network

sample Hb_002681_210 Hb_002681_210 Hb_004650_050 Hb_004650_050 Hb_002681_210--Hb_004650_050 Hb_019654_180 Hb_019654_180 Hb_002681_210--Hb_019654_180 Hb_000049_100 Hb_000049_100 Hb_002681_210--Hb_000049_100 Hb_017434_040 Hb_017434_040 Hb_002681_210--Hb_017434_040 Hb_009838_070 Hb_009838_070 Hb_002681_210--Hb_009838_070 Hb_003777_140 Hb_003777_140 Hb_002681_210--Hb_003777_140 Hb_004650_050--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_004650_050--Hb_000711_030 Hb_091433_050 Hb_091433_050 Hb_004650_050--Hb_091433_050 Hb_003680_060 Hb_003680_060 Hb_004650_050--Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_004650_050--Hb_009393_130 Hb_004096_210 Hb_004096_210 Hb_004650_050--Hb_004096_210 Hb_001729_030 Hb_001729_030 Hb_019654_180--Hb_001729_030 Hb_000190_230 Hb_000190_230 Hb_019654_180--Hb_000190_230 Hb_019654_180--Hb_009838_070 Hb_000951_150 Hb_000951_150 Hb_019654_180--Hb_000951_150 Hb_004032_280 Hb_004032_280 Hb_019654_180--Hb_004032_280 Hb_006831_090 Hb_006831_090 Hb_019654_180--Hb_006831_090 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000254_130 Hb_000254_130 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_002375_030 Hb_002375_030 Hb_000049_100--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_000049_100--Hb_010326_020 Hb_000608_270 Hb_000608_270 Hb_017434_040--Hb_000608_270 Hb_143629_180 Hb_143629_180 Hb_017434_040--Hb_143629_180 Hb_001571_100 Hb_001571_100 Hb_017434_040--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_017434_040--Hb_002028_020 Hb_000808_130 Hb_000808_130 Hb_017434_040--Hb_000808_130 Hb_041433_010 Hb_041433_010 Hb_017434_040--Hb_041433_010 Hb_000327_260 Hb_000327_260 Hb_009838_070--Hb_000327_260 Hb_009838_070--Hb_009393_130 Hb_009838_070--Hb_003680_060 Hb_009838_070--Hb_000711_030 Hb_009838_070--Hb_004096_210 Hb_166718_010 Hb_166718_010 Hb_003777_140--Hb_166718_010 Hb_003777_140--Hb_006831_090 Hb_002387_010 Hb_002387_010 Hb_003777_140--Hb_002387_010 Hb_086300_010 Hb_086300_010 Hb_003777_140--Hb_086300_010 Hb_172426_070 Hb_172426_070 Hb_003777_140--Hb_172426_070 Hb_000139_360 Hb_000139_360 Hb_003777_140--Hb_000139_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.726251 3.71932 87.7523 65.675 0 0.641346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97288 9.12667 0.271261 2.01305 124.046

CAGE analysis