Hb_002301_350

Information

Type -
Description -
Location Contig2301: 335665-339431
Sequence    

Annotation

kegg
ID rcu:RCOM_1674110
description 30S ribosomal protein S5, putative
nr
ID XP_002509457.1
description 30S ribosomal protein S5, putative [Ricinus communis]
swissprot
ID Q9ST69
description 30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1
trembl
ID B9RBC3
description 30S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_1674110 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24179: 335912-336211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_350 0.0 - - 30S ribosomal protein S5, putative [Ricinus communis]
2 Hb_006824_040 0.1731582283 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Populus euphratica]
3 Hb_000016_200 0.181352308 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000483_100 0.1929884659 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
5 Hb_002290_030 0.1985307799 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
6 Hb_001486_250 0.2046295329 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
7 Hb_004375_050 0.204848824 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001638_330 0.2121135048 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
9 Hb_022378_010 0.2126717209 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
10 Hb_004218_020 0.2145829801 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008173_150 0.21572271 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
12 Hb_001629_090 0.2171771138 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009150_030 0.2177060319 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
14 Hb_005147_080 0.2195720621 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_032717_060 0.221232021 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
16 Hb_000208_190 0.2217721834 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
17 Hb_001269_370 0.222603956 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
18 Hb_000188_060 0.2229910006 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
19 Hb_005000_080 0.2243114732 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
20 Hb_000318_130 0.2247851477 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002301_350 Hb_002301_350 Hb_006824_040 Hb_006824_040 Hb_002301_350--Hb_006824_040 Hb_000016_200 Hb_000016_200 Hb_002301_350--Hb_000016_200 Hb_000483_100 Hb_000483_100 Hb_002301_350--Hb_000483_100 Hb_002290_030 Hb_002290_030 Hb_002301_350--Hb_002290_030 Hb_001486_250 Hb_001486_250 Hb_002301_350--Hb_001486_250 Hb_004375_050 Hb_004375_050 Hb_002301_350--Hb_004375_050 Hb_004218_020 Hb_004218_020 Hb_006824_040--Hb_004218_020 Hb_006824_040--Hb_001486_250 Hb_002205_240 Hb_002205_240 Hb_006824_040--Hb_002205_240 Hb_011609_090 Hb_011609_090 Hb_006824_040--Hb_011609_090 Hb_004218_010 Hb_004218_010 Hb_006824_040--Hb_004218_010 Hb_000188_060 Hb_000188_060 Hb_000016_200--Hb_000188_060 Hb_005305_020 Hb_005305_020 Hb_000016_200--Hb_005305_020 Hb_000175_050 Hb_000175_050 Hb_000016_200--Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_000016_200--Hb_011053_030 Hb_005000_080 Hb_005000_080 Hb_000016_200--Hb_005000_080 Hb_020378_060 Hb_020378_060 Hb_000016_200--Hb_020378_060 Hb_004545_120 Hb_004545_120 Hb_000483_100--Hb_004545_120 Hb_002343_010 Hb_002343_010 Hb_000483_100--Hb_002343_010 Hb_001054_070 Hb_001054_070 Hb_000483_100--Hb_001054_070 Hb_000483_100--Hb_000016_200 Hb_001269_470 Hb_001269_470 Hb_000483_100--Hb_001269_470 Hb_002890_300 Hb_002890_300 Hb_000483_100--Hb_002890_300 Hb_002290_030--Hb_004375_050 Hb_001629_090 Hb_001629_090 Hb_002290_030--Hb_001629_090 Hb_005147_080 Hb_005147_080 Hb_002290_030--Hb_005147_080 Hb_000983_070 Hb_000983_070 Hb_002290_030--Hb_000983_070 Hb_000318_130 Hb_000318_130 Hb_002290_030--Hb_000318_130 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020 Hb_000120_640 Hb_000120_640 Hb_001486_250--Hb_000120_640 Hb_001486_250--Hb_004218_020 Hb_006740_030 Hb_006740_030 Hb_001486_250--Hb_006740_030 Hb_001486_250--Hb_004218_010 Hb_001019_100 Hb_001019_100 Hb_001486_250--Hb_001019_100 Hb_065525_120 Hb_065525_120 Hb_001486_250--Hb_065525_120 Hb_004375_050--Hb_001629_090 Hb_004375_050--Hb_005147_080 Hb_000340_150 Hb_000340_150 Hb_004375_050--Hb_000340_150 Hb_004375_050--Hb_000318_130 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.046889 0.851932 1.03694 0.477602 0.1018 0.352975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.190822 0.82548 0.969905 0.0602881 1.54042

CAGE analysis