Hb_002205_240

Information

Type -
Description -
Location Contig2205: 165276-168440
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa005987mg
description hypothetical protein
nr
ID XP_007218030.1
description hypothetical protein PRUPE_ppa005987mg [Prunus persica]
swissprot
ID Q28EW0
description Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1
trembl
ID M5WZY6
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005987mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 87a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_240 0.0 - - hypothetical protein PRUPE_ppa005987mg [Prunus persica]
2 Hb_032717_060 0.1421419933 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
3 Hb_004218_020 0.1544887424 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006740_030 0.1549243341 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
5 Hb_001159_190 0.1552881897 - - amino acid binding protein, putative [Ricinus communis]
6 Hb_001405_070 0.1560456223 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
7 Hb_004223_030 0.1573416077 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
8 Hb_000152_110 0.1573483731 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_000948_150 0.1578243037 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
10 Hb_000417_200 0.1656290502 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
11 Hb_001648_030 0.1684564729 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
12 Hb_000448_050 0.1693717633 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
13 Hb_146680_010 0.1716133047 - - hypothetical protein JCGZ_15486 [Jatropha curcas]
14 Hb_002241_010 0.1747241308 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
15 Hb_022318_020 0.1757705941 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
16 Hb_000340_150 0.1764489678 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
17 Hb_009778_060 0.1771993888 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
18 Hb_000482_040 0.1776737831 - - Protein YME1, putative [Ricinus communis]
19 Hb_001214_180 0.1783523269 - - -
20 Hb_001257_010 0.1783884891 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_240 Hb_002205_240 Hb_032717_060 Hb_032717_060 Hb_002205_240--Hb_032717_060 Hb_004218_020 Hb_004218_020 Hb_002205_240--Hb_004218_020 Hb_006740_030 Hb_006740_030 Hb_002205_240--Hb_006740_030 Hb_001159_190 Hb_001159_190 Hb_002205_240--Hb_001159_190 Hb_001405_070 Hb_001405_070 Hb_002205_240--Hb_001405_070 Hb_004223_030 Hb_004223_030 Hb_002205_240--Hb_004223_030 Hb_032717_060--Hb_006740_030 Hb_000482_040 Hb_000482_040 Hb_032717_060--Hb_000482_040 Hb_002542_110 Hb_002542_110 Hb_032717_060--Hb_002542_110 Hb_032717_060--Hb_001405_070 Hb_001226_140 Hb_001226_140 Hb_032717_060--Hb_001226_140 Hb_009778_060 Hb_009778_060 Hb_032717_060--Hb_009778_060 Hb_007810_010 Hb_007810_010 Hb_004218_020--Hb_007810_010 Hb_004218_020--Hb_006740_030 Hb_003913_130 Hb_003913_130 Hb_004218_020--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_004218_020--Hb_000120_640 Hb_004218_020--Hb_032717_060 Hb_004218_010 Hb_004218_010 Hb_004218_020--Hb_004218_010 Hb_000140_090 Hb_000140_090 Hb_006740_030--Hb_000140_090 Hb_001541_120 Hb_001541_120 Hb_006740_030--Hb_001541_120 Hb_000928_070 Hb_000928_070 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_008421_020 Hb_008421_020 Hb_006740_030--Hb_008421_020 Hb_007533_040 Hb_007533_040 Hb_006740_030--Hb_007533_040 Hb_001404_110 Hb_001404_110 Hb_001159_190--Hb_001404_110 Hb_000948_150 Hb_000948_150 Hb_001159_190--Hb_000948_150 Hb_001159_190--Hb_001405_070 Hb_001159_190--Hb_032717_060 Hb_000417_200 Hb_000417_200 Hb_001159_190--Hb_000417_200 Hb_066920_030 Hb_066920_030 Hb_001159_190--Hb_066920_030 Hb_001405_070--Hb_000417_200 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_012725_060 Hb_012725_060 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_001405_070--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_001405_070--Hb_000170_130 Hb_000510_290 Hb_000510_290 Hb_004223_030--Hb_000510_290 Hb_002184_110 Hb_002184_110 Hb_004223_030--Hb_002184_110 Hb_003038_240 Hb_003038_240 Hb_004223_030--Hb_003038_240 Hb_004223_030--Hb_000230_500 Hb_001247_250 Hb_001247_250 Hb_004223_030--Hb_001247_250 Hb_001648_030 Hb_001648_030 Hb_004223_030--Hb_001648_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146442 0.179682 0.159911 0.0795162 0.140036 0.055349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100143 0.210088 0.246131 0.0944186 0.27401

CAGE analysis