Hb_006824_040

Information

Type -
Description -
Location Contig6824: 66980-68400
Sequence    

Annotation

kegg
ID cic:CICLE_v10031551mg
description hypothetical protein
nr
ID XP_011043967.1
description PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A068UR96
description Coffea canephora DH200=94 genomic scaffold, scaffold_48 OS=Coffea canephora GN=GSCOC_T00031711001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006824_040 0.0 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Populus euphratica]
2 Hb_004218_020 0.1691793537 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001486_250 0.1697390474 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
4 Hb_002301_350 0.1731582283 - - 30S ribosomal protein S5, putative [Ricinus communis]
5 Hb_002205_240 0.1862910087 - - hypothetical protein PRUPE_ppa005987mg [Prunus persica]
6 Hb_011609_090 0.1942102451 - - protein with unknown function [Ricinus communis]
7 Hb_004218_010 0.1972429872 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_165026_010 0.1972730805 transcription factor TF Family: NAC hypothetical protein JCGZ_14166 [Jatropha curcas]
9 Hb_001147_050 0.2028517593 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
10 Hb_022318_020 0.2063514544 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
11 Hb_032717_060 0.2082958038 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
12 Hb_006740_030 0.2093853796 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
13 Hb_000120_640 0.2118910542 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_001105_110 0.2124775281 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027654_080 0.2128570369 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
16 Hb_003913_130 0.2140285256 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
17 Hb_007810_010 0.2156174177 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
18 Hb_004429_020 0.2181662664 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
19 Hb_000448_050 0.2194186508 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
20 Hb_002671_090 0.2208616183 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006824_040 Hb_006824_040 Hb_004218_020 Hb_004218_020 Hb_006824_040--Hb_004218_020 Hb_001486_250 Hb_001486_250 Hb_006824_040--Hb_001486_250 Hb_002301_350 Hb_002301_350 Hb_006824_040--Hb_002301_350 Hb_002205_240 Hb_002205_240 Hb_006824_040--Hb_002205_240 Hb_011609_090 Hb_011609_090 Hb_006824_040--Hb_011609_090 Hb_004218_010 Hb_004218_010 Hb_006824_040--Hb_004218_010 Hb_007810_010 Hb_007810_010 Hb_004218_020--Hb_007810_010 Hb_006740_030 Hb_006740_030 Hb_004218_020--Hb_006740_030 Hb_003913_130 Hb_003913_130 Hb_004218_020--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_004218_020--Hb_000120_640 Hb_032717_060 Hb_032717_060 Hb_004218_020--Hb_032717_060 Hb_004218_020--Hb_004218_010 Hb_001486_250--Hb_000120_640 Hb_001486_250--Hb_004218_020 Hb_001486_250--Hb_006740_030 Hb_001486_250--Hb_004218_010 Hb_001019_100 Hb_001019_100 Hb_001486_250--Hb_001019_100 Hb_065525_120 Hb_065525_120 Hb_001486_250--Hb_065525_120 Hb_000016_200 Hb_000016_200 Hb_002301_350--Hb_000016_200 Hb_000483_100 Hb_000483_100 Hb_002301_350--Hb_000483_100 Hb_002290_030 Hb_002290_030 Hb_002301_350--Hb_002290_030 Hb_002301_350--Hb_001486_250 Hb_004375_050 Hb_004375_050 Hb_002301_350--Hb_004375_050 Hb_002205_240--Hb_032717_060 Hb_002205_240--Hb_004218_020 Hb_002205_240--Hb_006740_030 Hb_001159_190 Hb_001159_190 Hb_002205_240--Hb_001159_190 Hb_001405_070 Hb_001405_070 Hb_002205_240--Hb_001405_070 Hb_004223_030 Hb_004223_030 Hb_002205_240--Hb_004223_030 Hb_004123_020 Hb_004123_020 Hb_011609_090--Hb_004123_020 Hb_002045_060 Hb_002045_060 Hb_011609_090--Hb_002045_060 Hb_015183_060 Hb_015183_060 Hb_011609_090--Hb_015183_060 Hb_001171_050 Hb_001171_050 Hb_011609_090--Hb_001171_050 Hb_000457_290 Hb_000457_290 Hb_011609_090--Hb_000457_290 Hb_001604_150 Hb_001604_150 Hb_011609_090--Hb_001604_150 Hb_004218_010--Hb_003913_130 Hb_004965_110 Hb_004965_110 Hb_004218_010--Hb_004965_110 Hb_000926_200 Hb_000926_200 Hb_004218_010--Hb_000926_200 Hb_003266_030 Hb_003266_030 Hb_004218_010--Hb_003266_030 Hb_053709_050 Hb_053709_050 Hb_004218_010--Hb_053709_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.191103 0.268868 0.102924 0.0287665 0.0717748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0700374 0.247937 0.309299 0.0880978 0.22952

CAGE analysis