Hb_002045_050

Information

Type -
Description -
Location Contig2045: 43751-43951
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21034: 43482-43823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_050 0.0 - - -
2 Hb_008725_120 0.3388408233 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Populus euphratica]
3 Hb_011671_190 0.3419205927 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
4 Hb_021650_020 0.3470152557 - - nitrate transporter, putative [Ricinus communis]
5 Hb_003020_060 0.3521164822 - - PREDICTED: low-temperature-induced 65 kDa protein [Jatropha curcas]
6 Hb_092703_010 0.3521891573 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
7 Hb_000080_160 0.3535556372 - - Peroxin 13 [Theobroma cacao]
8 Hb_003992_160 0.3594788122 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
9 Hb_000085_420 0.3605672092 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000618_090 0.3612419176 - - -
11 Hb_000816_260 0.3640438962 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_003994_130 0.3677510874 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Jatropha curcas]
13 Hb_005539_230 0.3683426254 - - hypothetical protein L484_027799 [Morus notabilis]
14 Hb_007632_180 0.3773523165 - - Pectate lyase precursor, putative [Ricinus communis]
15 Hb_079751_010 0.3804476615 - - r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_000710_090 0.3832139247 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
17 Hb_061466_010 0.3844159169 - - hypothetical protein POPTR_0013s14640g [Populus trichocarpa]
18 Hb_007078_010 0.3884316595 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006487_040 0.3925254249 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_000117_140 0.3938106319 - - hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_002045_050 Hb_002045_050 Hb_008725_120 Hb_008725_120 Hb_002045_050--Hb_008725_120 Hb_011671_190 Hb_011671_190 Hb_002045_050--Hb_011671_190 Hb_021650_020 Hb_021650_020 Hb_002045_050--Hb_021650_020 Hb_003020_060 Hb_003020_060 Hb_002045_050--Hb_003020_060 Hb_092703_010 Hb_092703_010 Hb_002045_050--Hb_092703_010 Hb_000080_160 Hb_000080_160 Hb_002045_050--Hb_000080_160 Hb_000062_290 Hb_000062_290 Hb_008725_120--Hb_000062_290 Hb_003992_160 Hb_003992_160 Hb_008725_120--Hb_003992_160 Hb_007632_180 Hb_007632_180 Hb_008725_120--Hb_007632_180 Hb_005539_230 Hb_005539_230 Hb_008725_120--Hb_005539_230 Hb_005831_010 Hb_005831_010 Hb_008725_120--Hb_005831_010 Hb_003050_010 Hb_003050_010 Hb_008725_120--Hb_003050_010 Hb_000424_040 Hb_000424_040 Hb_011671_190--Hb_000424_040 Hb_011671_190--Hb_092703_010 Hb_000699_100 Hb_000699_100 Hb_011671_190--Hb_000699_100 Hb_009851_010 Hb_009851_010 Hb_011671_190--Hb_009851_010 Hb_169209_010 Hb_169209_010 Hb_011671_190--Hb_169209_010 Hb_000809_240 Hb_000809_240 Hb_011671_190--Hb_000809_240 Hb_009288_030 Hb_009288_030 Hb_021650_020--Hb_009288_030 Hb_000012_320 Hb_000012_320 Hb_021650_020--Hb_000012_320 Hb_000244_150 Hb_000244_150 Hb_021650_020--Hb_000244_150 Hb_001476_130 Hb_001476_130 Hb_021650_020--Hb_001476_130 Hb_021650_020--Hb_000080_160 Hb_006472_080 Hb_006472_080 Hb_021650_020--Hb_006472_080 Hb_000613_230 Hb_000613_230 Hb_003020_060--Hb_000613_230 Hb_000710_090 Hb_000710_090 Hb_003020_060--Hb_000710_090 Hb_006487_040 Hb_006487_040 Hb_003020_060--Hb_006487_040 Hb_000567_400 Hb_000567_400 Hb_003020_060--Hb_000567_400 Hb_001546_160 Hb_001546_160 Hb_003020_060--Hb_001546_160 Hb_003992_050 Hb_003992_050 Hb_003020_060--Hb_003992_050 Hb_092703_010--Hb_000424_040 Hb_003786_080 Hb_003786_080 Hb_092703_010--Hb_003786_080 Hb_000017_350 Hb_000017_350 Hb_092703_010--Hb_000017_350 Hb_092703_010--Hb_169209_010 Hb_032202_150 Hb_032202_150 Hb_092703_010--Hb_032202_150 Hb_002722_010 Hb_002722_010 Hb_000080_160--Hb_002722_010 Hb_000080_160--Hb_006472_080 Hb_000618_090 Hb_000618_090 Hb_000080_160--Hb_000618_090 Hb_003994_130 Hb_003994_130 Hb_000080_160--Hb_003994_130 Hb_001021_070 Hb_001021_070 Hb_000080_160--Hb_001021_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.806856 0 3.55716 0 0.807814 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.25765 1.60821 1.29304

CAGE analysis