Hb_001492_030

Information

Type -
Description -
Location Contig1492: 108349-112314
Sequence    

Annotation

kegg
ID tcc:TCM_029590
description Pentatricopeptide repeat superfamily protein
nr
ID XP_012082578.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
swissprot
ID Q2V3H0
description Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2
trembl
ID A0A067K2M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16657 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001492_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
2 Hb_000864_030 0.0708626904 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
3 Hb_008059_010 0.0888730985 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
4 Hb_031284_010 0.0891142564 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
5 Hb_000804_040 0.0902644154 - - protein with unknown function [Ricinus communis]
6 Hb_000115_280 0.0904123786 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
7 Hb_025557_050 0.0922969558 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
8 Hb_000174_170 0.0967081561 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
9 Hb_000015_100 0.0969029397 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_000160_210 0.0972211828 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001789_190 0.0972968933 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
12 Hb_000679_020 0.0977075852 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
13 Hb_017151_010 0.0988278937 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
14 Hb_000402_120 0.0997424174 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
15 Hb_001377_110 0.1014619857 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
16 Hb_001662_140 0.1015772092 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
17 Hb_006483_110 0.1018225518 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
18 Hb_150651_030 0.1021922373 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
19 Hb_000080_120 0.1029335914 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
20 Hb_000917_320 0.1042580473 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001492_030 Hb_001492_030 Hb_000864_030 Hb_000864_030 Hb_001492_030--Hb_000864_030 Hb_008059_010 Hb_008059_010 Hb_001492_030--Hb_008059_010 Hb_031284_010 Hb_031284_010 Hb_001492_030--Hb_031284_010 Hb_000804_040 Hb_000804_040 Hb_001492_030--Hb_000804_040 Hb_000115_280 Hb_000115_280 Hb_001492_030--Hb_000115_280 Hb_025557_050 Hb_025557_050 Hb_001492_030--Hb_025557_050 Hb_000679_020 Hb_000679_020 Hb_000864_030--Hb_000679_020 Hb_000174_170 Hb_000174_170 Hb_000864_030--Hb_000174_170 Hb_004800_180 Hb_004800_180 Hb_000864_030--Hb_004800_180 Hb_000864_030--Hb_008059_010 Hb_000563_420 Hb_000563_420 Hb_000864_030--Hb_000563_420 Hb_000864_030--Hb_000115_280 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_031284_010--Hb_000115_280 Hb_003186_020 Hb_003186_020 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230 Hb_000205_190 Hb_000205_190 Hb_000804_040--Hb_000205_190 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_004970_190 Hb_004970_190 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_012022_150 Hb_012022_150 Hb_000804_040--Hb_012022_150 Hb_000753_240 Hb_000753_240 Hb_000804_040--Hb_000753_240 Hb_000115_280--Hb_003186_020 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_001789_190 Hb_001789_190 Hb_025557_050--Hb_001789_190 Hb_010812_050 Hb_010812_050 Hb_025557_050--Hb_010812_050 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_025557_050--Hb_031284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6553 4.06529 6.57332 2.53992 5.8214 6.67607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4842 4.23273 3.56429 4.37256 8.29374

CAGE analysis