Hb_001225_090

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig1225: 126844-131427
Sequence    

Annotation

kegg
ID rcu:RCOM_0834700
description transcription factor, putative
nr
ID XP_002532423.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q7X9B9
description Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3
trembl
ID B9T2F4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0834700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06845: 128726-130175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001225_090 0.0 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
2 Hb_012226_010 0.1425791719 - - PREDICTED: protein DGCR14 [Jatropha curcas]
3 Hb_002235_240 0.1481354771 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
4 Hb_001141_360 0.1483199902 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
5 Hb_005656_140 0.1508836889 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
6 Hb_000976_290 0.1520349218 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
7 Hb_002609_090 0.1554009069 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000243_380 0.1561881521 - - PREDICTED: histone H1 [Jatropha curcas]
9 Hb_003849_260 0.1591597885 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
10 Hb_010921_030 0.1591855589 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
11 Hb_000836_120 0.1612435041 - - syntaxin, putative [Ricinus communis]
12 Hb_003494_060 0.163137064 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
13 Hb_029223_050 0.1651639187 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
14 Hb_000123_330 0.1665902007 - - hypothetical protein M569_14136, partial [Genlisea aurea]
15 Hb_000340_110 0.1672395289 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
16 Hb_042175_010 0.1711135192 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
17 Hb_104265_030 0.1713534873 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
18 Hb_000261_190 0.1734386941 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
19 Hb_002835_250 0.174764038 - - octicosapeptide/Phox/Bem1p domain-containing family protein [Populus trichocarpa]
20 Hb_144824_010 0.1775326081 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]

Gene co-expression network

sample Hb_001225_090 Hb_001225_090 Hb_012226_010 Hb_012226_010 Hb_001225_090--Hb_012226_010 Hb_002235_240 Hb_002235_240 Hb_001225_090--Hb_002235_240 Hb_001141_360 Hb_001141_360 Hb_001225_090--Hb_001141_360 Hb_005656_140 Hb_005656_140 Hb_001225_090--Hb_005656_140 Hb_000976_290 Hb_000976_290 Hb_001225_090--Hb_000976_290 Hb_002609_090 Hb_002609_090 Hb_001225_090--Hb_002609_090 Hb_000340_110 Hb_000340_110 Hb_012226_010--Hb_000340_110 Hb_003125_030 Hb_003125_030 Hb_012226_010--Hb_003125_030 Hb_029223_050 Hb_029223_050 Hb_012226_010--Hb_029223_050 Hb_104265_030 Hb_104265_030 Hb_012226_010--Hb_104265_030 Hb_001511_110 Hb_001511_110 Hb_012226_010--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_012226_010--Hb_026198_040 Hb_129204_060 Hb_129204_060 Hb_002235_240--Hb_129204_060 Hb_000836_120 Hb_000836_120 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_002235_240--Hb_000215_410 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_001141_360--Hb_012226_010 Hb_005656_140--Hb_003494_060 Hb_002760_040 Hb_002760_040 Hb_005656_140--Hb_002760_040 Hb_009838_060 Hb_009838_060 Hb_005656_140--Hb_009838_060 Hb_005656_140--Hb_129204_060 Hb_005656_140--Hb_001141_360 Hb_005656_140--Hb_002235_240 Hb_000976_290--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_000976_290--Hb_127599_010 Hb_000976_290--Hb_003494_060 Hb_000010_350 Hb_000010_350 Hb_000976_290--Hb_000010_350 Hb_002026_060 Hb_002026_060 Hb_000976_290--Hb_002026_060 Hb_000976_290--Hb_001141_360 Hb_003633_140 Hb_003633_140 Hb_002609_090--Hb_003633_140 Hb_164010_070 Hb_164010_070 Hb_002609_090--Hb_164010_070 Hb_002609_090--Hb_000340_110 Hb_000032_310 Hb_000032_310 Hb_002609_090--Hb_000032_310 Hb_144824_010 Hb_144824_010 Hb_002609_090--Hb_144824_010 Hb_006683_040 Hb_006683_040 Hb_002609_090--Hb_006683_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11731 26.4556 1.13993 2.46564 6.943 5.53869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96764 6.15717 2.77417 5.29375 2.34623

CAGE analysis