Hb_001117_200

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig1117: 159960-171555
Sequence    

Annotation

kegg
ID rcu:RCOM_0619310
description hypothetical protein
nr
ID XP_002528863.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SIV5
description Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3
trembl
ID B9SS94
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0619310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03550: 159793-160346 , PASA_asmbl_03552: 163894-164625 , PASA_asmbl_03553: 169354-174322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_200 0.0 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
2 Hb_000025_270 0.1275392446 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
3 Hb_001863_500 0.1301001384 - - Protein brittle-1, chloroplast precursor, putative [Ricinus communis]
4 Hb_001824_090 0.1319569849 - - -
5 Hb_007101_080 0.1330755464 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
6 Hb_005282_020 0.1456574651 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
7 Hb_002518_120 0.151649546 - - hypothetical protein RCOM_0731250 [Ricinus communis]
8 Hb_003994_110 0.1519182607 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
9 Hb_001595_080 0.1526394389 - - conserved hypothetical protein [Ricinus communis]
10 Hb_032258_010 0.1535061642 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
11 Hb_000613_110 0.1544817612 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
12 Hb_003020_030 0.1561841577 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
13 Hb_000087_140 0.1562008728 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
14 Hb_036790_080 0.156987184 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
15 Hb_007894_220 0.1591820411 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
16 Hb_032920_050 0.1597575592 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
17 Hb_011512_110 0.1640699143 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_004218_190 0.1652448401 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
19 Hb_004724_410 0.1675082822 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
20 Hb_003376_230 0.1694258664 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001117_200 Hb_001117_200 Hb_000025_270 Hb_000025_270 Hb_001117_200--Hb_000025_270 Hb_001863_500 Hb_001863_500 Hb_001117_200--Hb_001863_500 Hb_001824_090 Hb_001824_090 Hb_001117_200--Hb_001824_090 Hb_007101_080 Hb_007101_080 Hb_001117_200--Hb_007101_080 Hb_005282_020 Hb_005282_020 Hb_001117_200--Hb_005282_020 Hb_002518_120 Hb_002518_120 Hb_001117_200--Hb_002518_120 Hb_003020_030 Hb_003020_030 Hb_000025_270--Hb_003020_030 Hb_000025_270--Hb_007101_080 Hb_004724_410 Hb_004724_410 Hb_000025_270--Hb_004724_410 Hb_001623_280 Hb_001623_280 Hb_000025_270--Hb_001623_280 Hb_001936_090 Hb_001936_090 Hb_000025_270--Hb_001936_090 Hb_004218_190 Hb_004218_190 Hb_000025_270--Hb_004218_190 Hb_000200_030 Hb_000200_030 Hb_001863_500--Hb_000200_030 Hb_002095_010 Hb_002095_010 Hb_001863_500--Hb_002095_010 Hb_001301_100 Hb_001301_100 Hb_001863_500--Hb_001301_100 Hb_006275_070 Hb_006275_070 Hb_001863_500--Hb_006275_070 Hb_007317_140 Hb_007317_140 Hb_001863_500--Hb_007317_140 Hb_003994_110 Hb_003994_110 Hb_001824_090--Hb_003994_110 Hb_000613_110 Hb_000613_110 Hb_001824_090--Hb_000613_110 Hb_001824_090--Hb_007101_080 Hb_002078_340 Hb_002078_340 Hb_001824_090--Hb_002078_340 Hb_003376_230 Hb_003376_230 Hb_001824_090--Hb_003376_230 Hb_000077_150 Hb_000077_150 Hb_001824_090--Hb_000077_150 Hb_032920_050 Hb_032920_050 Hb_007101_080--Hb_032920_050 Hb_007101_080--Hb_000613_110 Hb_007101_080--Hb_004218_190 Hb_007101_080--Hb_003994_110 Hb_003544_010 Hb_003544_010 Hb_005282_020--Hb_003544_010 Hb_000676_200 Hb_000676_200 Hb_005282_020--Hb_000676_200 Hb_000012_160 Hb_000012_160 Hb_005282_020--Hb_000012_160 Hb_000608_170 Hb_000608_170 Hb_005282_020--Hb_000608_170 Hb_002685_060 Hb_002685_060 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_032258_010 Hb_032258_010 Hb_002518_120--Hb_032258_010 Hb_015026_080 Hb_015026_080 Hb_002518_120--Hb_015026_080 Hb_002282_070 Hb_002282_070 Hb_002518_120--Hb_002282_070 Hb_003475_020 Hb_003475_020 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.295067 0.255444 0.968375 0.377287 1.20164 1.22436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.685952 0.666126 1.03248 1.27095 2.84219

CAGE analysis