Hb_001103_050

Information

Type -
Description -
Location Contig1103: 77731-81458
Sequence    

Annotation

kegg
ID bdi:100841432
description protein NRT1/ PTR FAMILY 5.10-like
nr
ID XP_010272857.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nelumbo nucifera]
swissprot
ID Q9FNL8
description Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana GN=NPF5.3 PE=2 SV=1
trembl
ID K4C7D1
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g065020.2 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001103_050 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nelumbo nucifera]
2 Hb_089206_010 0.2459654648 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_000357_120 0.2673205108 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
4 Hb_001172_140 0.2764665149 - - hypothetical protein POPTR_0014s17790g [Populus trichocarpa]
5 Hb_006472_020 0.2863096674 - - heat shock protein [Cicer arietinum]
6 Hb_008226_030 0.2988747979 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
7 Hb_170193_020 0.3017342119 - - -
8 Hb_002722_010 0.3036966417 - - Disease resistance response protein, putative [Ricinus communis]
9 Hb_007885_090 0.3037858672 - - hypothetical protein POPTR_0001s08950g [Populus trichocarpa]
10 Hb_052689_010 0.3043950795 - - heat shock cognate protein [Solanum commersonii]
11 Hb_004125_130 0.3063169281 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
12 Hb_000816_260 0.3064279201 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_000137_020 0.3066743639 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
14 Hb_007590_070 0.3097266341 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
15 Hb_000661_260 0.3104696872 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
16 Hb_000559_070 0.3107513598 - - calcineurin B, putative [Ricinus communis]
17 Hb_000809_180 0.3119475196 - - -
18 Hb_011909_010 0.3122884194 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
19 Hb_004374_120 0.3129703513 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
20 Hb_004712_150 0.3139539827 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001103_050 Hb_001103_050 Hb_089206_010 Hb_089206_010 Hb_001103_050--Hb_089206_010 Hb_000357_120 Hb_000357_120 Hb_001103_050--Hb_000357_120 Hb_001172_140 Hb_001172_140 Hb_001103_050--Hb_001172_140 Hb_006472_020 Hb_006472_020 Hb_001103_050--Hb_006472_020 Hb_008226_030 Hb_008226_030 Hb_001103_050--Hb_008226_030 Hb_170193_020 Hb_170193_020 Hb_001103_050--Hb_170193_020 Hb_183443_010 Hb_183443_010 Hb_089206_010--Hb_183443_010 Hb_063943_010 Hb_063943_010 Hb_089206_010--Hb_063943_010 Hb_089206_010--Hb_000357_120 Hb_003688_160 Hb_003688_160 Hb_089206_010--Hb_003688_160 Hb_052689_010 Hb_052689_010 Hb_089206_010--Hb_052689_010 Hb_004097_120 Hb_004097_120 Hb_089206_010--Hb_004097_120 Hb_000137_020 Hb_000137_020 Hb_000357_120--Hb_000137_020 Hb_000357_120--Hb_004097_120 Hb_006185_060 Hb_006185_060 Hb_000357_120--Hb_006185_060 Hb_000357_120--Hb_006472_020 Hb_009367_080 Hb_009367_080 Hb_000357_120--Hb_009367_080 Hb_000809_180 Hb_000809_180 Hb_001172_140--Hb_000809_180 Hb_003839_010 Hb_003839_010 Hb_001172_140--Hb_003839_010 Hb_010029_020 Hb_010029_020 Hb_001172_140--Hb_010029_020 Hb_011909_010 Hb_011909_010 Hb_001172_140--Hb_011909_010 Hb_158445_020 Hb_158445_020 Hb_001172_140--Hb_158445_020 Hb_004411_030 Hb_004411_030 Hb_001172_140--Hb_004411_030 Hb_000229_030 Hb_000229_030 Hb_006472_020--Hb_000229_030 Hb_003910_060 Hb_003910_060 Hb_006472_020--Hb_003910_060 Hb_000890_050 Hb_000890_050 Hb_006472_020--Hb_000890_050 Hb_000189_110 Hb_000189_110 Hb_006472_020--Hb_000189_110 Hb_001862_180 Hb_001862_180 Hb_006472_020--Hb_001862_180 Hb_001268_380 Hb_001268_380 Hb_006472_020--Hb_001268_380 Hb_001393_010 Hb_001393_010 Hb_008226_030--Hb_001393_010 Hb_003408_060 Hb_003408_060 Hb_008226_030--Hb_003408_060 Hb_005489_070 Hb_005489_070 Hb_008226_030--Hb_005489_070 Hb_007735_060 Hb_007735_060 Hb_008226_030--Hb_007735_060 Hb_001178_030 Hb_001178_030 Hb_008226_030--Hb_001178_030 Hb_000367_020 Hb_000367_020 Hb_008226_030--Hb_000367_020 Hb_044005_010 Hb_044005_010 Hb_170193_020--Hb_044005_010 Hb_099496_010 Hb_099496_010 Hb_170193_020--Hb_099496_010 Hb_001516_050 Hb_001516_050 Hb_170193_020--Hb_001516_050 Hb_002780_060 Hb_002780_060 Hb_170193_020--Hb_002780_060 Hb_000559_070 Hb_000559_070 Hb_170193_020--Hb_000559_070 Hb_022213_030 Hb_022213_030 Hb_170193_020--Hb_022213_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37609 2.00436 1.03982 0.920143 0.0900917 0.103049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.230543 0.0181396 2.54416 2.20152 1.6858

CAGE analysis