Hb_006472_020

Information

Type -
Description -
Location Contig6472: 13334-29787
Sequence    

Annotation

kegg
ID brp:103847447
description heat shock 70 kDa protein 18
nr
ID AII99890.1
description heat shock protein [Cicer arietinum]
swissprot
ID P27322
description Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1
trembl
ID A0A076KXD2
description Heat shock protein OS=Cicer arietinum PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable mediator of rna polymerase ii transcription subunit 37c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52365: 13212-16474 , PASA_asmbl_52366: 13212-29491 , PASA_asmbl_52367: 13212-29491 , PASA_asmbl_52372: 19616-30582 , PASA_asmbl_52373: 19616-21074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006472_020 0.0 - - heat shock protein [Cicer arietinum]
2 Hb_000229_030 0.104268063 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
3 Hb_003910_060 0.1287943336 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
4 Hb_000890_050 0.1290547357 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
5 Hb_000189_110 0.129081946 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
6 Hb_001862_180 0.1353539689 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
7 Hb_001268_380 0.1442274338 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
8 Hb_007904_030 0.1444986433 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
9 Hb_000130_490 0.1449401704 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
10 Hb_002063_020 0.1463092139 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
11 Hb_002316_160 0.1466358638 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
12 Hb_003544_180 0.1489634561 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
13 Hb_000015_050 0.1492598995 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
14 Hb_003020_050 0.1502968567 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_009767_080 0.1505612715 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
16 Hb_005348_010 0.1515823661 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000264_320 0.1525062849 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
18 Hb_006718_020 0.1527457921 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
19 Hb_001930_010 0.1530077966 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
20 Hb_029142_050 0.1530809504 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006472_020 Hb_006472_020 Hb_000229_030 Hb_000229_030 Hb_006472_020--Hb_000229_030 Hb_003910_060 Hb_003910_060 Hb_006472_020--Hb_003910_060 Hb_000890_050 Hb_000890_050 Hb_006472_020--Hb_000890_050 Hb_000189_110 Hb_000189_110 Hb_006472_020--Hb_000189_110 Hb_001862_180 Hb_001862_180 Hb_006472_020--Hb_001862_180 Hb_001268_380 Hb_001268_380 Hb_006472_020--Hb_001268_380 Hb_000229_030--Hb_000890_050 Hb_012656_030 Hb_012656_030 Hb_000229_030--Hb_012656_030 Hb_004143_130 Hb_004143_130 Hb_000229_030--Hb_004143_130 Hb_000229_030--Hb_001862_180 Hb_005699_090 Hb_005699_090 Hb_000229_030--Hb_005699_090 Hb_003910_060--Hb_001862_180 Hb_000366_040 Hb_000366_040 Hb_003910_060--Hb_000366_040 Hb_002316_160 Hb_002316_160 Hb_003910_060--Hb_002316_160 Hb_000388_090 Hb_000388_090 Hb_003910_060--Hb_000388_090 Hb_002055_040 Hb_002055_040 Hb_003910_060--Hb_002055_040 Hb_002063_020 Hb_002063_020 Hb_003910_060--Hb_002063_020 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_000890_050--Hb_001967_030 Hb_000189_110--Hb_001268_380 Hb_001472_090 Hb_001472_090 Hb_000189_110--Hb_001472_090 Hb_005656_040 Hb_005656_040 Hb_000189_110--Hb_005656_040 Hb_000189_110--Hb_009767_080 Hb_000803_260 Hb_000803_260 Hb_000189_110--Hb_000803_260 Hb_000189_110--Hb_000318_390 Hb_003203_030 Hb_003203_030 Hb_001862_180--Hb_003203_030 Hb_001205_230 Hb_001205_230 Hb_001862_180--Hb_001205_230 Hb_001862_180--Hb_000803_260 Hb_001862_180--Hb_000388_090 Hb_001329_140 Hb_001329_140 Hb_001862_180--Hb_001329_140 Hb_004228_020 Hb_004228_020 Hb_001268_380--Hb_004228_020 Hb_001268_380--Hb_009767_080 Hb_001268_380--Hb_000890_050 Hb_002780_010 Hb_002780_010 Hb_001268_380--Hb_002780_010 Hb_005486_030 Hb_005486_030 Hb_001268_380--Hb_005486_030 Hb_002007_160 Hb_002007_160 Hb_001268_380--Hb_002007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8833 8.75514 3.09575 2.35922 5.67048 5.21727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70182 2.31811 11.369 8.44792 9.24032

CAGE analysis