Hb_001027_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1027: 36801-38969
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03720g
description POPTRDRAFT_665317; hypothetical protein
nr
ID XP_002325344.1
description hypothetical protein POPTR_0019s03720g [Populus trichocarpa]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9IPB4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s03720g PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01126: 36958-37797 , PASA_asmbl_01127: 37970-38564 , PASA_asmbl_01128: 38767-39019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001027_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0019s03720g [Populus trichocarpa]
2 Hb_000061_510 0.0944528161 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
3 Hb_002095_070 0.1185985391 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
4 Hb_003211_040 0.1215828862 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
5 Hb_000015_050 0.1268559783 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
6 Hb_174865_020 0.1335736959 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
7 Hb_000189_110 0.1338129332 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
8 Hb_000189_100 0.134674134 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
9 Hb_004228_020 0.1360912421 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
10 Hb_003805_050 0.1366483594 - - -
11 Hb_005539_090 0.137975336 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
12 Hb_000083_270 0.1383699555 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
13 Hb_001268_380 0.1386282023 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
14 Hb_000206_040 0.139477561 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
15 Hb_011947_050 0.1401460153 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
16 Hb_002701_040 0.1403993481 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
17 Hb_018133_050 0.1418842177 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
18 Hb_000261_150 0.1433797296 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000105_030 0.1436489919 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
20 Hb_003284_030 0.1445876842 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001027_010 Hb_001027_010 Hb_000061_510 Hb_000061_510 Hb_001027_010--Hb_000061_510 Hb_002095_070 Hb_002095_070 Hb_001027_010--Hb_002095_070 Hb_003211_040 Hb_003211_040 Hb_001027_010--Hb_003211_040 Hb_000015_050 Hb_000015_050 Hb_001027_010--Hb_000015_050 Hb_174865_020 Hb_174865_020 Hb_001027_010--Hb_174865_020 Hb_000189_110 Hb_000189_110 Hb_001027_010--Hb_000189_110 Hb_000061_510--Hb_002095_070 Hb_000189_100 Hb_000189_100 Hb_000061_510--Hb_000189_100 Hb_000206_040 Hb_000206_040 Hb_000061_510--Hb_000206_040 Hb_000061_510--Hb_003211_040 Hb_000836_020 Hb_000836_020 Hb_000061_510--Hb_000836_020 Hb_000261_150 Hb_000261_150 Hb_002095_070--Hb_000261_150 Hb_002095_070--Hb_003211_040 Hb_000083_070 Hb_000083_070 Hb_002095_070--Hb_000083_070 Hb_002095_070--Hb_000836_020 Hb_003805_050 Hb_003805_050 Hb_002095_070--Hb_003805_050 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030 Hb_007576_210 Hb_007576_210 Hb_003211_040--Hb_007576_210 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_009486_170 Hb_009486_170 Hb_003211_040--Hb_009486_170 Hb_005348_010 Hb_005348_010 Hb_000015_050--Hb_005348_010 Hb_002174_030 Hb_002174_030 Hb_000015_050--Hb_002174_030 Hb_000015_050--Hb_002909_120 Hb_000015_050--Hb_002095_070 Hb_000046_190 Hb_000046_190 Hb_000015_050--Hb_000046_190 Hb_009767_080 Hb_009767_080 Hb_000015_050--Hb_009767_080 Hb_174865_020--Hb_011947_050 Hb_000949_010 Hb_000949_010 Hb_174865_020--Hb_000949_010 Hb_003284_030 Hb_003284_030 Hb_174865_020--Hb_003284_030 Hb_174865_020--Hb_003211_040 Hb_000174_290 Hb_000174_290 Hb_174865_020--Hb_000174_290 Hb_018133_050 Hb_018133_050 Hb_174865_020--Hb_018133_050 Hb_001268_380 Hb_001268_380 Hb_000189_110--Hb_001268_380 Hb_001472_090 Hb_001472_090 Hb_000189_110--Hb_001472_090 Hb_005656_040 Hb_005656_040 Hb_000189_110--Hb_005656_040 Hb_000189_110--Hb_009767_080 Hb_000803_260 Hb_000803_260 Hb_000189_110--Hb_000803_260 Hb_000318_390 Hb_000318_390 Hb_000189_110--Hb_000318_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0547 27.4639 2.68373 2.70051 13.6266 13.6265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57855 4.46786 12.9281 17.3879 16.6103

CAGE analysis