Hb_000866_200

Information

Type -
Description -
Location Contig866: 161128-162805
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_200 0.0 - - -
2 Hb_139569_010 0.2618809984 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
3 Hb_004453_190 0.3047849716 - - -
4 Hb_004088_060 0.3156406339 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
5 Hb_000216_010 0.3183265594 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
6 Hb_000659_020 0.3276749056 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
7 Hb_001749_030 0.3298617204 - - -
8 Hb_176894_010 0.3344804036 - - -
9 Hb_001214_150 0.3401668972 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
10 Hb_170516_010 0.3450237313 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
11 Hb_004453_180 0.3464860103 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
12 Hb_004945_020 0.3523803869 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
13 Hb_006503_010 0.3540455844 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_021596_060 0.3540847705 - - PREDICTED: peroxidase 56-like, partial [Solanum tuberosum]
15 Hb_005946_120 0.3543797639 - - peptidase, putative [Ricinus communis]
16 Hb_000029_410 0.35637515 - - AT14A, putative [Ricinus communis]
17 Hb_000608_220 0.3565613373 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
18 Hb_018691_020 0.3580650545 - - -
19 Hb_000237_130 0.3589734428 - - -
20 Hb_005307_040 0.3615580303 - - gulonolactone oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000866_200 Hb_000866_200 Hb_139569_010 Hb_139569_010 Hb_000866_200--Hb_139569_010 Hb_004453_190 Hb_004453_190 Hb_000866_200--Hb_004453_190 Hb_004088_060 Hb_004088_060 Hb_000866_200--Hb_004088_060 Hb_000216_010 Hb_000216_010 Hb_000866_200--Hb_000216_010 Hb_000659_020 Hb_000659_020 Hb_000866_200--Hb_000659_020 Hb_001749_030 Hb_001749_030 Hb_000866_200--Hb_001749_030 Hb_139569_010--Hb_004453_190 Hb_001369_290 Hb_001369_290 Hb_139569_010--Hb_001369_290 Hb_026186_010 Hb_026186_010 Hb_139569_010--Hb_026186_010 Hb_139569_010--Hb_000216_010 Hb_088117_010 Hb_088117_010 Hb_139569_010--Hb_088117_010 Hb_001016_020 Hb_001016_020 Hb_139569_010--Hb_001016_020 Hb_129105_010 Hb_129105_010 Hb_004453_190--Hb_129105_010 Hb_004453_190--Hb_001016_020 Hb_021596_060 Hb_021596_060 Hb_004453_190--Hb_021596_060 Hb_004453_190--Hb_026186_010 Hb_133661_010 Hb_133661_010 Hb_004453_190--Hb_133661_010 Hb_001414_130 Hb_001414_130 Hb_004088_060--Hb_001414_130 Hb_001638_080 Hb_001638_080 Hb_004088_060--Hb_001638_080 Hb_010874_030 Hb_010874_030 Hb_004088_060--Hb_010874_030 Hb_005048_060 Hb_005048_060 Hb_004088_060--Hb_005048_060 Hb_001214_150 Hb_001214_150 Hb_004088_060--Hb_001214_150 Hb_015909_010 Hb_015909_010 Hb_004088_060--Hb_015909_010 Hb_006503_010 Hb_006503_010 Hb_000216_010--Hb_006503_010 Hb_143629_030 Hb_143629_030 Hb_000216_010--Hb_143629_030 Hb_009775_040 Hb_009775_040 Hb_000216_010--Hb_009775_040 Hb_002571_040 Hb_002571_040 Hb_000216_010--Hb_002571_040 Hb_001470_070 Hb_001470_070 Hb_000216_010--Hb_001470_070 Hb_007137_030 Hb_007137_030 Hb_000659_020--Hb_007137_030 Hb_003226_080 Hb_003226_080 Hb_000659_020--Hb_003226_080 Hb_001079_030 Hb_001079_030 Hb_000659_020--Hb_001079_030 Hb_093177_010 Hb_093177_010 Hb_000659_020--Hb_093177_010 Hb_001514_060 Hb_001514_060 Hb_000659_020--Hb_001514_060 Hb_008246_090 Hb_008246_090 Hb_000659_020--Hb_008246_090 Hb_017524_010 Hb_017524_010 Hb_001749_030--Hb_017524_010 Hb_001749_030--Hb_000659_020 Hb_001373_020 Hb_001373_020 Hb_001749_030--Hb_001373_020 Hb_141142_010 Hb_141142_010 Hb_001749_030--Hb_141142_010 Hb_133508_010 Hb_133508_010 Hb_001749_030--Hb_133508_010 Hb_170516_010 Hb_170516_010 Hb_001749_030--Hb_170516_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206336 0.0462676 0.140713 0.12106 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.110513 0 0.0460691 0

CAGE analysis