Hb_000840_260

Information

Type transcription factor
Description TF Family: GRAS
Location Contig840: 184656-186122
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02540g
description hypothetical protein
nr
ID XP_006371003.1
description hypothetical protein POPTR_0019s02540g [Populus trichocarpa]
swissprot
ID Q5NE24
description Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1
trembl
ID U5FEG1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02540g PE=4 SV=1
Gene Ontology
ID GO:0006351
description nodulation-signaling pathway 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_260 0.0 transcription factor TF Family: GRAS hypothetical protein POPTR_0019s02540g [Populus trichocarpa]
2 Hb_011994_070 0.2238510996 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
3 Hb_179645_010 0.2608008207 - - -
4 Hb_004954_020 0.2613695181 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
5 Hb_004108_190 0.2658973156 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
6 Hb_000483_330 0.2809160044 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
7 Hb_002028_280 0.287680879 - - hypothetical protein RCOM_1397400 [Ricinus communis]
8 Hb_002073_090 0.2901606875 - - PREDICTED: copper transporter 6-like [Jatropha curcas]
9 Hb_010050_040 0.2909918829 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
10 Hb_001148_060 0.292496571 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
11 Hb_010417_130 0.2983781921 - - PREDICTED: probable membrane-associated kinase regulator 2 [Jatropha curcas]
12 Hb_000179_060 0.3047501707 - - hypothetical protein POPTR_0010s23130g, partial [Populus trichocarpa]
13 Hb_002010_110 0.3103964306 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
14 Hb_000221_090 0.3114312617 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
15 Hb_000270_830 0.3140543105 - - aldehyde dehydrogenase, putative [Ricinus communis]
16 Hb_006717_010 0.3143107587 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
17 Hb_114271_010 0.3143792927 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
18 Hb_001198_130 0.3174715138 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
19 Hb_001488_390 0.317651721 - - SP1L, putative [Ricinus communis]
20 Hb_172632_130 0.3176922827 - - hypothetical protein JCGZ_22584 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_260 Hb_000840_260 Hb_011994_070 Hb_011994_070 Hb_000840_260--Hb_011994_070 Hb_179645_010 Hb_179645_010 Hb_000840_260--Hb_179645_010 Hb_004954_020 Hb_004954_020 Hb_000840_260--Hb_004954_020 Hb_004108_190 Hb_004108_190 Hb_000840_260--Hb_004108_190 Hb_000483_330 Hb_000483_330 Hb_000840_260--Hb_000483_330 Hb_002028_280 Hb_002028_280 Hb_000840_260--Hb_002028_280 Hb_010417_130 Hb_010417_130 Hb_011994_070--Hb_010417_130 Hb_000270_830 Hb_000270_830 Hb_011994_070--Hb_000270_830 Hb_000084_140 Hb_000084_140 Hb_011994_070--Hb_000084_140 Hb_001195_250 Hb_001195_250 Hb_011994_070--Hb_001195_250 Hb_106070_010 Hb_106070_010 Hb_011994_070--Hb_106070_010 Hb_000042_060 Hb_000042_060 Hb_011994_070--Hb_000042_060 Hb_179645_010--Hb_004108_190 Hb_019333_010 Hb_019333_010 Hb_179645_010--Hb_019333_010 Hb_000179_060 Hb_000179_060 Hb_179645_010--Hb_000179_060 Hb_010050_040 Hb_010050_040 Hb_179645_010--Hb_010050_040 Hb_179645_010--Hb_004954_020 Hb_004954_020--Hb_004108_190 Hb_114271_010 Hb_114271_010 Hb_004954_020--Hb_114271_010 Hb_001148_060 Hb_001148_060 Hb_004954_020--Hb_001148_060 Hb_014361_030 Hb_014361_030 Hb_004954_020--Hb_014361_030 Hb_002542_060 Hb_002542_060 Hb_004954_020--Hb_002542_060 Hb_004954_020--Hb_011994_070 Hb_004108_190--Hb_002028_280 Hb_004108_190--Hb_114271_010 Hb_000215_230 Hb_000215_230 Hb_004108_190--Hb_000215_230 Hb_024066_040 Hb_024066_040 Hb_004108_190--Hb_024066_040 Hb_000392_210 Hb_000392_210 Hb_004108_190--Hb_000392_210 Hb_000318_300 Hb_000318_300 Hb_000483_330--Hb_000318_300 Hb_000684_220 Hb_000684_220 Hb_000483_330--Hb_000684_220 Hb_000300_480 Hb_000300_480 Hb_000483_330--Hb_000300_480 Hb_000853_180 Hb_000853_180 Hb_000483_330--Hb_000853_180 Hb_001789_100 Hb_001789_100 Hb_000483_330--Hb_001789_100 Hb_000056_190 Hb_000056_190 Hb_000483_330--Hb_000056_190 Hb_000061_440 Hb_000061_440 Hb_002028_280--Hb_000061_440 Hb_002244_020 Hb_002244_020 Hb_002028_280--Hb_002244_020 Hb_002400_260 Hb_002400_260 Hb_002028_280--Hb_002400_260 Hb_004117_370 Hb_004117_370 Hb_002028_280--Hb_004117_370 Hb_003654_020 Hb_003654_020 Hb_002028_280--Hb_003654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0490339 0.0605779 0.0331308 0.0759591 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0320405 0 0 0 0.105369

CAGE analysis