Hb_002400_260

Information

Type -
Description -
Location Contig2400: 210195-213423
Sequence    

Annotation

kegg
ID rcu:RCOM_0923440
description catalytic, putative (EC:2.4.1.224)
nr
ID XP_002515489.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q3E7Q9
description Probable glycosyltransferase At5g25310 OS=Arabidopsis thaliana GN=At5g25310 PE=3 SV=2
trembl
ID B9RP20
description Catalytic, putative OS=Ricinus communis GN=RCOM_0923440 PE=4 SV=1
Gene Ontology
ID GO:0050508
description probable glycosyltransferase at5g25310

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_260 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_002842_010 0.0524814898 - - sulfate transporter, putative [Ricinus communis]
3 Hb_002421_150 0.0965989013 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
4 Hb_025557_060 0.1034285389 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
5 Hb_000373_160 0.1088183072 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
6 Hb_005678_020 0.1115906268 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_005288_100 0.1131423558 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
8 Hb_001115_070 0.1144917637 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
9 Hb_000708_020 0.1151231298 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_173387_010 0.1166789942 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
11 Hb_132840_170 0.1172939379 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
12 Hb_031069_040 0.1196172522 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_033363_030 0.1226015163 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
14 Hb_008412_040 0.1234691864 - - unnamed protein product [Vitis vinifera]
15 Hb_119600_030 0.1258521545 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
16 Hb_000815_090 0.1262042155 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
17 Hb_002284_160 0.1263397683 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
18 Hb_000061_440 0.1264762297 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_003209_150 0.1278481769 - - CLE9, putative [Ricinus communis]
20 Hb_000002_500 0.1285981071 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_260 Hb_002400_260 Hb_002842_010 Hb_002842_010 Hb_002400_260--Hb_002842_010 Hb_002421_150 Hb_002421_150 Hb_002400_260--Hb_002421_150 Hb_025557_060 Hb_025557_060 Hb_002400_260--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_002400_260--Hb_000373_160 Hb_005678_020 Hb_005678_020 Hb_002400_260--Hb_005678_020 Hb_005288_100 Hb_005288_100 Hb_002400_260--Hb_005288_100 Hb_002842_010--Hb_025557_060 Hb_002842_010--Hb_000373_160 Hb_002842_010--Hb_002421_150 Hb_000002_500 Hb_000002_500 Hb_002842_010--Hb_000002_500 Hb_119600_030 Hb_119600_030 Hb_002842_010--Hb_119600_030 Hb_000826_010 Hb_000826_010 Hb_002421_150--Hb_000826_010 Hb_002421_150--Hb_000373_160 Hb_002701_250 Hb_002701_250 Hb_002421_150--Hb_002701_250 Hb_000329_430 Hb_000329_430 Hb_002421_150--Hb_000329_430 Hb_003925_120 Hb_003925_120 Hb_002421_150--Hb_003925_120 Hb_001269_030 Hb_001269_030 Hb_002421_150--Hb_001269_030 Hb_018591_020 Hb_018591_020 Hb_025557_060--Hb_018591_020 Hb_096224_050 Hb_096224_050 Hb_025557_060--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_025557_060--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_025557_060--Hb_007904_110 Hb_001699_140 Hb_001699_140 Hb_025557_060--Hb_001699_140 Hb_025557_060--Hb_119600_030 Hb_005054_120 Hb_005054_120 Hb_000373_160--Hb_005054_120 Hb_000373_160--Hb_002701_250 Hb_000373_160--Hb_000826_010 Hb_000373_160--Hb_001269_030 Hb_031069_040 Hb_031069_040 Hb_000373_160--Hb_031069_040 Hb_000462_010 Hb_000462_010 Hb_005678_020--Hb_000462_010 Hb_005843_010 Hb_005843_010 Hb_005678_020--Hb_005843_010 Hb_009315_010 Hb_009315_010 Hb_005678_020--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005678_020--Hb_005010_030 Hb_036790_110 Hb_036790_110 Hb_005678_020--Hb_036790_110 Hb_000708_020 Hb_000708_020 Hb_005678_020--Hb_000708_020 Hb_005288_100--Hb_036790_110 Hb_005288_100--Hb_005678_020 Hb_008727_060 Hb_008727_060 Hb_005288_100--Hb_008727_060 Hb_005288_100--Hb_009315_010 Hb_000389_170 Hb_000389_170 Hb_005288_100--Hb_000389_170 Hb_005288_100--Hb_005843_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0140674 0.0221926 0.0216938 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0529249

CAGE analysis