Hb_002842_010

Information

Type -
Description -
Location Contig2842: 10324-14966
Sequence    

Annotation

kegg
ID rcu:RCOM_0843730
description sulfate transporter, putative
nr
ID XP_002526028.1
description sulfate transporter, putative [Ricinus communis]
swissprot
ID Q9SXS2
description Probable sulfate transporter 3.3 OS=Arabidopsis thaliana GN=SULTR3;3 PE=2 SV=2
trembl
ID B9SJ59
description Sulfate transporter, putative OS=Ricinus communis GN=RCOM_0843730 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sulfate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29745: 10422-14957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002842_010 0.0 - - sulfate transporter, putative [Ricinus communis]
2 Hb_002400_260 0.0524814898 - - catalytic, putative [Ricinus communis]
3 Hb_025557_060 0.0798664721 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
4 Hb_000373_160 0.0926874949 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
5 Hb_002421_150 0.0946552464 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
6 Hb_000002_500 0.0969066884 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
7 Hb_119600_030 0.0980316201 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
8 Hb_002852_010 0.1004511118 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_000708_020 0.1009654903 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_001115_070 0.1016853438 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
11 Hb_005054_120 0.1018862278 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
12 Hb_008412_040 0.1022534515 - - unnamed protein product [Vitis vinifera]
13 Hb_002259_090 0.1068274717 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
14 Hb_005678_020 0.1091149819 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002284_160 0.1120479334 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
16 Hb_102179_010 0.1139087997 - - protein binding protein, putative [Ricinus communis]
17 Hb_132840_170 0.113943622 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
18 Hb_173387_010 0.1141305463 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
19 Hb_018591_020 0.1146093531 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_001047_210 0.1204627107 - - PSI reaction center subunit II [Citrus sinensis]

Gene co-expression network

sample Hb_002842_010 Hb_002842_010 Hb_002400_260 Hb_002400_260 Hb_002842_010--Hb_002400_260 Hb_025557_060 Hb_025557_060 Hb_002842_010--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_002842_010--Hb_000373_160 Hb_002421_150 Hb_002421_150 Hb_002842_010--Hb_002421_150 Hb_000002_500 Hb_000002_500 Hb_002842_010--Hb_000002_500 Hb_119600_030 Hb_119600_030 Hb_002842_010--Hb_119600_030 Hb_002400_260--Hb_002421_150 Hb_002400_260--Hb_025557_060 Hb_002400_260--Hb_000373_160 Hb_005678_020 Hb_005678_020 Hb_002400_260--Hb_005678_020 Hb_005288_100 Hb_005288_100 Hb_002400_260--Hb_005288_100 Hb_018591_020 Hb_018591_020 Hb_025557_060--Hb_018591_020 Hb_096224_050 Hb_096224_050 Hb_025557_060--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_025557_060--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_025557_060--Hb_007904_110 Hb_001699_140 Hb_001699_140 Hb_025557_060--Hb_001699_140 Hb_025557_060--Hb_119600_030 Hb_005054_120 Hb_005054_120 Hb_000373_160--Hb_005054_120 Hb_002701_250 Hb_002701_250 Hb_000373_160--Hb_002701_250 Hb_000826_010 Hb_000826_010 Hb_000373_160--Hb_000826_010 Hb_001269_030 Hb_001269_030 Hb_000373_160--Hb_001269_030 Hb_031069_040 Hb_031069_040 Hb_000373_160--Hb_031069_040 Hb_000373_160--Hb_002421_150 Hb_002421_150--Hb_000826_010 Hb_002421_150--Hb_002701_250 Hb_000329_430 Hb_000329_430 Hb_002421_150--Hb_000329_430 Hb_003925_120 Hb_003925_120 Hb_002421_150--Hb_003925_120 Hb_002421_150--Hb_001269_030 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_000002_500--Hb_018591_020 Hb_001115_070 Hb_001115_070 Hb_000002_500--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_000002_500--Hb_002284_160 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_119600_030--Hb_007904_110 Hb_119600_030--Hb_000373_160 Hb_119600_030--Hb_004979_070 Hb_002852_010 Hb_002852_010 Hb_119600_030--Hb_002852_010 Hb_119600_030--Hb_002701_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0103553 10.4156 21.487 20.1224 0.0312969 0.0974141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0379575 0.0298677 0.0568583 0.0830653 47.922

CAGE analysis