Hb_000703_250

Information

Type -
Description -
Location Contig703: 254705-255229
Sequence    

Annotation

kegg
ID gmx:100802937
description uncharacterized LOC100802937
nr
ID XP_012075501.1
description PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
swissprot
ID Q9S7R3
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1
trembl
ID A0A067KTB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11031 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54958: 252573-255280
cDNA
(Sanger)
(ID:Location)		 003_F17.ab1: 252765-255256 , 025_L01.ab1: 254566-255256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_250 0.0 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
2 Hb_004230_040 0.1615982937 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002138_010 0.1689006064 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
4 Hb_000317_400 0.1727041636 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
5 Hb_009510_040 0.1729011237 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
6 Hb_000923_050 0.1817055541 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
7 Hb_005568_080 0.1817276576 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000329_250 0.1866895635 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
9 Hb_001481_120 0.1902728989 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
10 Hb_001150_040 0.191616368 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
11 Hb_000742_110 0.192325376 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
12 Hb_008566_020 0.1925661701 - - sodium/hydrogen exchanger, putative [Ricinus communis]
13 Hb_006153_120 0.1930713236 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
14 Hb_002798_060 0.1951743993 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
15 Hb_001277_320 0.1956425264 - - Stem-specific protein TSJT1, putative [Ricinus communis]
16 Hb_000318_100 0.196120076 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
17 Hb_023536_010 0.196624282 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
18 Hb_001619_080 0.197959846 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003683_040 0.1985763001 - - unnamed protein product [Coffea canephora]
20 Hb_001538_100 0.1990269216 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_250 Hb_000703_250 Hb_004230_040 Hb_004230_040 Hb_000703_250--Hb_004230_040 Hb_002138_010 Hb_002138_010 Hb_000703_250--Hb_002138_010 Hb_000317_400 Hb_000317_400 Hb_000703_250--Hb_000317_400 Hb_009510_040 Hb_009510_040 Hb_000703_250--Hb_009510_040 Hb_000923_050 Hb_000923_050 Hb_000703_250--Hb_000923_050 Hb_005568_080 Hb_005568_080 Hb_000703_250--Hb_005568_080 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400 Hb_002374_400 Hb_002374_400 Hb_002138_010--Hb_002374_400 Hb_000003_270 Hb_000003_270 Hb_002138_010--Hb_000003_270 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_000742_110 Hb_000742_110 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_003209_200 Hb_003209_200 Hb_002138_010--Hb_003209_200 Hb_000329_250 Hb_000329_250 Hb_000317_400--Hb_000329_250 Hb_000317_400--Hb_000923_050 Hb_001136_010 Hb_001136_010 Hb_000317_400--Hb_001136_010 Hb_000317_400--Hb_000742_110 Hb_001824_010 Hb_001824_010 Hb_000317_400--Hb_001824_010 Hb_001277_320 Hb_001277_320 Hb_000317_400--Hb_001277_320 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_000243_140 Hb_000243_140 Hb_009510_040--Hb_000243_140 Hb_000503_050 Hb_000503_050 Hb_009510_040--Hb_000503_050 Hb_000003_050 Hb_000003_050 Hb_009510_040--Hb_000003_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_011828_020 Hb_011828_020 Hb_000923_050--Hb_011828_020 Hb_000329_650 Hb_000329_650 Hb_000923_050--Hb_000329_650 Hb_000395_080 Hb_000395_080 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000696_340 Hb_000696_340 Hb_000923_050--Hb_000696_340 Hb_002333_080 Hb_002333_080 Hb_000923_050--Hb_002333_080 Hb_021888_050 Hb_021888_050 Hb_005568_080--Hb_021888_050 Hb_000326_060 Hb_000326_060 Hb_005568_080--Hb_000326_060 Hb_033772_050 Hb_033772_050 Hb_005568_080--Hb_033772_050 Hb_009486_190 Hb_009486_190 Hb_005568_080--Hb_009486_190 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
179.039 204.452 0.754875 130.339 147.56 137.72
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
473.39 410.623 270.503 426.106 0

CAGE analysis