Hb_000465_050

Information

Type -
Description -
Location Contig465: 23059-36939
Sequence    

Annotation

kegg
ID rcu:RCOM_1389090
description DNA mismatch repair protein mutS, putative
nr
ID XP_012070017.1
description PREDICTED: DNA mismatch repair protein MSH4 [Jatropha curcas]
swissprot
ID F4JP48
description DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana GN=MSH4 PE=2 SV=1
trembl
ID A0A067L5W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03421 PE=3 SV=1
Gene Ontology
ID GO:0000794
description dna mismatch repair protein msh4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43943: 32020-35286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_050 0.0 - - PREDICTED: DNA mismatch repair protein MSH4 [Jatropha curcas]
2 Hb_000227_390 0.1136412531 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
3 Hb_000193_260 0.1141545643 - - PREDICTED: protein NEN1 [Jatropha curcas]
4 Hb_000120_890 0.1203697287 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
5 Hb_000703_190 0.1258339918 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
6 Hb_003498_100 0.1269155808 - - component of oligomeric golgi complex, putative [Ricinus communis]
7 Hb_001799_160 0.1307811655 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_001279_190 0.1312867832 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
9 Hb_000243_260 0.1322039284 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
10 Hb_018790_020 0.1327611926 - - protein kinase, putative [Ricinus communis]
11 Hb_019654_050 0.1328755818 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
12 Hb_061256_010 0.134482517 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
13 Hb_007850_030 0.1382282037 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
14 Hb_000476_060 0.1394186639 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_001014_060 0.1408455105 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
16 Hb_005846_050 0.1409539193 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
17 Hb_007483_070 0.1414051843 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
18 Hb_001454_230 0.1415054693 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
19 Hb_001014_070 0.1419242123 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
20 Hb_000830_020 0.1424678403 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_050 Hb_000465_050 Hb_000227_390 Hb_000227_390 Hb_000465_050--Hb_000227_390 Hb_000193_260 Hb_000193_260 Hb_000465_050--Hb_000193_260 Hb_000120_890 Hb_000120_890 Hb_000465_050--Hb_000120_890 Hb_000703_190 Hb_000703_190 Hb_000465_050--Hb_000703_190 Hb_003498_100 Hb_003498_100 Hb_000465_050--Hb_003498_100 Hb_001799_160 Hb_001799_160 Hb_000465_050--Hb_001799_160 Hb_001279_190 Hb_001279_190 Hb_000227_390--Hb_001279_190 Hb_007483_070 Hb_007483_070 Hb_000227_390--Hb_007483_070 Hb_000120_810 Hb_000120_810 Hb_000227_390--Hb_000120_810 Hb_004079_130 Hb_004079_130 Hb_000227_390--Hb_004079_130 Hb_003540_050 Hb_003540_050 Hb_000227_390--Hb_003540_050 Hb_000227_390--Hb_000703_190 Hb_002534_130 Hb_002534_130 Hb_000193_260--Hb_002534_130 Hb_061256_010 Hb_061256_010 Hb_000193_260--Hb_061256_010 Hb_026198_010 Hb_026198_010 Hb_000193_260--Hb_026198_010 Hb_000009_520 Hb_000009_520 Hb_000193_260--Hb_000009_520 Hb_002693_030 Hb_002693_030 Hb_000193_260--Hb_002693_030 Hb_001147_050 Hb_001147_050 Hb_000193_260--Hb_001147_050 Hb_000120_890--Hb_003498_100 Hb_000476_060 Hb_000476_060 Hb_000120_890--Hb_000476_060 Hb_001504_010 Hb_001504_010 Hb_000120_890--Hb_001504_010 Hb_178968_060 Hb_178968_060 Hb_000120_890--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000317_040 Hb_000317_040 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_003498_100--Hb_178968_060 Hb_089839_010 Hb_089839_010 Hb_003498_100--Hb_089839_010 Hb_003498_100--Hb_001279_190 Hb_003498_100--Hb_000703_190 Hb_003498_100--Hb_001799_160 Hb_000318_220 Hb_000318_220 Hb_001799_160--Hb_000318_220 Hb_001799_160--Hb_000120_890 Hb_001799_160--Hb_001504_010 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0091663 0.0683163 0.134824 0.102211 0.0489895 0.0272762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0504008 0.0396603 0.0756785 0.0682242 0.0562595

CAGE analysis