Hb_000190_020

Information

Type -
Description -
Location Contig190: 28081-31382
Sequence    

Annotation

kegg
ID rcu:RCOM_0990510
description hypothetical protein
nr
ID XP_012092157.1
description PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
swissprot
ID Q55DM1
description BEACH domain-containing protein lvsA OS=Dictyostelium discoideum GN=lvsA PE=3 SV=2
trembl
ID A0A067JC21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21867 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_020 0.0 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
2 Hb_001164_030 0.2655473208 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
3 Hb_000483_480 0.2861892888 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010506_010 0.3000270482 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
5 Hb_000692_020 0.3029856571 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
6 Hb_091889_010 0.3068506422 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_000175_140 0.310346509 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000768_140 0.3105198845 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
9 Hb_000418_080 0.3137941549 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
10 Hb_001832_150 0.3164413668 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
11 Hb_006570_050 0.3167498918 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
12 Hb_002243_060 0.321615541 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
13 Hb_000891_030 0.3269276805 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
14 Hb_002042_080 0.3325585089 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
15 Hb_005147_010 0.3327001613 - - PREDICTED: uncharacterized protein LOC105629670 [Jatropha curcas]
16 Hb_004162_180 0.3348151955 - - zinc finger protein, putative [Ricinus communis]
17 Hb_007951_130 0.3357736917 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
18 Hb_139138_010 0.3360315433 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
19 Hb_020805_060 0.3395703861 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
20 Hb_000310_070 0.3415913782 - - BnaA06g08330D [Brassica napus]

Gene co-expression network

sample Hb_000190_020 Hb_000190_020 Hb_001164_030 Hb_001164_030 Hb_000190_020--Hb_001164_030 Hb_000483_480 Hb_000483_480 Hb_000190_020--Hb_000483_480 Hb_010506_010 Hb_010506_010 Hb_000190_020--Hb_010506_010 Hb_000692_020 Hb_000692_020 Hb_000190_020--Hb_000692_020 Hb_091889_010 Hb_091889_010 Hb_000190_020--Hb_091889_010 Hb_000175_140 Hb_000175_140 Hb_000190_020--Hb_000175_140 Hb_020805_060 Hb_020805_060 Hb_001164_030--Hb_020805_060 Hb_000768_140 Hb_000768_140 Hb_001164_030--Hb_000768_140 Hb_000483_090 Hb_000483_090 Hb_001164_030--Hb_000483_090 Hb_000291_270 Hb_000291_270 Hb_001164_030--Hb_000291_270 Hb_001164_030--Hb_091889_010 Hb_000120_150 Hb_000120_150 Hb_001164_030--Hb_000120_150 Hb_002603_060 Hb_002603_060 Hb_000483_480--Hb_002603_060 Hb_000483_480--Hb_000692_020 Hb_004567_020 Hb_004567_020 Hb_000483_480--Hb_004567_020 Hb_001105_090 Hb_001105_090 Hb_000483_480--Hb_001105_090 Hb_008066_030 Hb_008066_030 Hb_000483_480--Hb_008066_030 Hb_000031_080 Hb_000031_080 Hb_000483_480--Hb_000031_080 Hb_010506_010--Hb_091889_010 Hb_010506_010--Hb_000120_150 Hb_140049_010 Hb_140049_010 Hb_010506_010--Hb_140049_010 Hb_004787_040 Hb_004787_040 Hb_010506_010--Hb_004787_040 Hb_010506_010--Hb_001164_030 Hb_005162_100 Hb_005162_100 Hb_010506_010--Hb_005162_100 Hb_000692_020--Hb_002603_060 Hb_000692_020--Hb_004567_020 Hb_001017_070 Hb_001017_070 Hb_000692_020--Hb_001017_070 Hb_000816_230 Hb_000816_230 Hb_000692_020--Hb_000816_230 Hb_007943_140 Hb_007943_140 Hb_000692_020--Hb_007943_140 Hb_091889_010--Hb_000120_150 Hb_000943_060 Hb_000943_060 Hb_091889_010--Hb_000943_060 Hb_002217_460 Hb_002217_460 Hb_091889_010--Hb_002217_460 Hb_011628_020 Hb_011628_020 Hb_091889_010--Hb_011628_020 Hb_006570_050 Hb_006570_050 Hb_000175_140--Hb_006570_050 Hb_092233_010 Hb_092233_010 Hb_000175_140--Hb_092233_010 Hb_000896_110 Hb_000896_110 Hb_000175_140--Hb_000896_110 Hb_000175_140--Hb_000483_090 Hb_117092_010 Hb_117092_010 Hb_000175_140--Hb_117092_010 Hb_000175_140--Hb_001164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0553248 0 0.0427279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0761527 0.159778 0.0377592 0 0.0420692

CAGE analysis