Hb_006570_050

Information

Type -
Description -
Location Contig6570: 18016-20269
Sequence    

Annotation

kegg
ID tcc:TCM_034236
description SKU5 similar 18
nr
ID XP_012073887.1
description PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID A0A061FKK6
description SKU5 similar 18 OS=Theobroma cacao GN=TCM_034236 PE=4 SV=1
Gene Ontology
ID GO:0005576
description monocopper oxidase-like protein sks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52782: 16386-17117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_050 0.0 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
2 Hb_000120_150 0.1961499775 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
3 Hb_000175_140 0.2047959205 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001164_030 0.2360664727 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
5 Hb_000072_340 0.2369540991 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003891_090 0.2596971635 - - -
7 Hb_006907_080 0.2620158993 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
8 Hb_000483_090 0.2692685773 - - -
9 Hb_091889_010 0.2725991011 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_001516_020 0.2733881576 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Jatropha curcas]
11 Hb_000768_140 0.2752924885 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
12 Hb_010506_010 0.2763081569 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
13 Hb_140049_010 0.2805159866 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
14 Hb_003020_170 0.2831664982 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_000418_080 0.2898141878 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
16 Hb_020805_060 0.2907156896 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
17 Hb_092233_010 0.3018460418 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
18 Hb_000656_410 0.3032172365 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
19 Hb_000943_060 0.3084746548 - - PREDICTED: uncharacterized protein LOC105635589 [Jatropha curcas]
20 Hb_000291_270 0.3096972171 - - hypothetical protein JCGZ_12006 [Jatropha curcas]

Gene co-expression network

sample Hb_006570_050 Hb_006570_050 Hb_000120_150 Hb_000120_150 Hb_006570_050--Hb_000120_150 Hb_000175_140 Hb_000175_140 Hb_006570_050--Hb_000175_140 Hb_001164_030 Hb_001164_030 Hb_006570_050--Hb_001164_030 Hb_000072_340 Hb_000072_340 Hb_006570_050--Hb_000072_340 Hb_003891_090 Hb_003891_090 Hb_006570_050--Hb_003891_090 Hb_006907_080 Hb_006907_080 Hb_006570_050--Hb_006907_080 Hb_000120_150--Hb_000072_340 Hb_010506_010 Hb_010506_010 Hb_000120_150--Hb_010506_010 Hb_004787_040 Hb_004787_040 Hb_000120_150--Hb_004787_040 Hb_091889_010 Hb_091889_010 Hb_000120_150--Hb_091889_010 Hb_000120_150--Hb_001164_030 Hb_000270_740 Hb_000270_740 Hb_000120_150--Hb_000270_740 Hb_092233_010 Hb_092233_010 Hb_000175_140--Hb_092233_010 Hb_000896_110 Hb_000896_110 Hb_000175_140--Hb_000896_110 Hb_000483_090 Hb_000483_090 Hb_000175_140--Hb_000483_090 Hb_117092_010 Hb_117092_010 Hb_000175_140--Hb_117092_010 Hb_000175_140--Hb_001164_030 Hb_020805_060 Hb_020805_060 Hb_001164_030--Hb_020805_060 Hb_000768_140 Hb_000768_140 Hb_001164_030--Hb_000768_140 Hb_001164_030--Hb_000483_090 Hb_000291_270 Hb_000291_270 Hb_001164_030--Hb_000291_270 Hb_001164_030--Hb_091889_010 Hb_000072_340--Hb_000483_090 Hb_000072_340--Hb_020805_060 Hb_000072_340--Hb_000270_740 Hb_000072_340--Hb_000291_270 Hb_000072_340--Hb_000768_140 Hb_000152_310 Hb_000152_310 Hb_003891_090--Hb_000152_310 Hb_001401_100 Hb_001401_100 Hb_003891_090--Hb_001401_100 Hb_003891_090--Hb_091889_010 Hb_002227_010 Hb_002227_010 Hb_003891_090--Hb_002227_010 Hb_000656_410 Hb_000656_410 Hb_003891_090--Hb_000656_410 Hb_011628_020 Hb_011628_020 Hb_003891_090--Hb_011628_020 Hb_140049_010 Hb_140049_010 Hb_006907_080--Hb_140049_010 Hb_006907_080--Hb_000120_150 Hb_007558_020 Hb_007558_020 Hb_006907_080--Hb_007558_020 Hb_000418_080 Hb_000418_080 Hb_006907_080--Hb_000418_080 Hb_104764_010 Hb_104764_010 Hb_006907_080--Hb_104764_010 Hb_002035_110 Hb_002035_110 Hb_006907_080--Hb_002035_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0309077 0.00926157 0.0670935 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0283562 0.111548 0.042044 0 0

CAGE analysis