Hb_000175_140

Information

Type -
Description -
Location Contig175: 96987-98562
Sequence    

Annotation

kegg
ID rcu:RCOM_0900680
description hypothetical protein
nr
ID XP_002517651.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV82
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006570_050 0.2047959205 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
3 Hb_092233_010 0.207773793 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
4 Hb_000896_110 0.2358934744 - - -
5 Hb_000483_090 0.2502044818 - - -
6 Hb_117092_010 0.2787364931 - - acyl-CoA oxidase, putative [Ricinus communis]
7 Hb_001164_030 0.2810726573 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
8 Hb_003007_010 0.2813103839 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
9 Hb_004100_090 0.2848481345 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
10 Hb_000072_340 0.2914553847 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000120_150 0.2929546625 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
12 Hb_001516_020 0.299056684 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Jatropha curcas]
13 Hb_005725_100 0.3032422008 - - hypothetical protein 30 [Hevea brasiliensis]
14 Hb_008215_030 0.3037397328 - - hypothetical protein 3 [Hevea brasiliensis]
15 Hb_005321_010 0.306635534 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
16 Hb_003891_090 0.3071568866 - - -
17 Hb_000768_140 0.3100060748 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
18 Hb_000656_410 0.3102130252 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
19 Hb_000190_020 0.310346509 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
20 Hb_002043_120 0.3125574338 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000175_140 Hb_000175_140 Hb_006570_050 Hb_006570_050 Hb_000175_140--Hb_006570_050 Hb_092233_010 Hb_092233_010 Hb_000175_140--Hb_092233_010 Hb_000896_110 Hb_000896_110 Hb_000175_140--Hb_000896_110 Hb_000483_090 Hb_000483_090 Hb_000175_140--Hb_000483_090 Hb_117092_010 Hb_117092_010 Hb_000175_140--Hb_117092_010 Hb_001164_030 Hb_001164_030 Hb_000175_140--Hb_001164_030 Hb_000120_150 Hb_000120_150 Hb_006570_050--Hb_000120_150 Hb_006570_050--Hb_001164_030 Hb_000072_340 Hb_000072_340 Hb_006570_050--Hb_000072_340 Hb_003891_090 Hb_003891_090 Hb_006570_050--Hb_003891_090 Hb_006907_080 Hb_006907_080 Hb_006570_050--Hb_006907_080 Hb_092233_010--Hb_000896_110 Hb_000205_200 Hb_000205_200 Hb_092233_010--Hb_000205_200 Hb_033376_010 Hb_033376_010 Hb_092233_010--Hb_033376_010 Hb_005021_010 Hb_005021_010 Hb_092233_010--Hb_005021_010 Hb_092233_010--Hb_000072_340 Hb_005245_070 Hb_005245_070 Hb_000896_110--Hb_005245_070 Hb_001635_020 Hb_001635_020 Hb_000896_110--Hb_001635_020 Hb_003502_100 Hb_003502_100 Hb_000896_110--Hb_003502_100 Hb_001922_180 Hb_001922_180 Hb_000896_110--Hb_001922_180 Hb_000291_270 Hb_000291_270 Hb_000483_090--Hb_000291_270 Hb_004100_090 Hb_004100_090 Hb_000483_090--Hb_004100_090 Hb_003007_010 Hb_003007_010 Hb_000483_090--Hb_003007_010 Hb_003540_200 Hb_003540_200 Hb_000483_090--Hb_003540_200 Hb_020805_060 Hb_020805_060 Hb_000483_090--Hb_020805_060 Hb_000483_090--Hb_001164_030 Hb_117092_010--Hb_000205_200 Hb_000239_110 Hb_000239_110 Hb_117092_010--Hb_000239_110 Hb_000025_440 Hb_000025_440 Hb_117092_010--Hb_000025_440 Hb_186158_010 Hb_186158_010 Hb_117092_010--Hb_186158_010 Hb_002259_140 Hb_002259_140 Hb_117092_010--Hb_002259_140 Hb_001164_030--Hb_020805_060 Hb_000768_140 Hb_000768_140 Hb_001164_030--Hb_000768_140 Hb_001164_030--Hb_000291_270 Hb_091889_010 Hb_091889_010 Hb_001164_030--Hb_091889_010 Hb_001164_030--Hb_000120_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0133515 0 0.0975261 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.073451 0.202234 0.0539632 0 0

CAGE analysis