Hb_005021_010

Information

Type -
Description -
Location Contig5021: 52018-56425
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19190g
description POPTRDRAFT_766665; hypothetical protein
nr
ID XP_012078171.1
description PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45902: 56551-56923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005021_010 0.0 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
2 Hb_029920_020 0.2459019318 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
3 Hb_000258_060 0.2467072739 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000217_010 0.2568560392 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
5 Hb_002205_170 0.2688903879 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
6 Hb_001486_270 0.27577499 - - Ann10 [Manihot esculenta]
7 Hb_092233_010 0.2785096728 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
8 Hb_000192_020 0.2793651152 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
9 Hb_000240_100 0.282280083 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
10 Hb_077399_010 0.2922569228 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
11 Hb_001408_070 0.2929068147 - - -
12 Hb_000922_120 0.2942479654 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
13 Hb_000260_790 0.2952643438 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
14 Hb_000179_120 0.2970884591 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
15 Hb_175933_010 0.3015399478 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
16 Hb_000260_280 0.3031196869 - - auxin:hydrogen symporter, putative [Ricinus communis]
17 Hb_001195_490 0.303125161 - - hypothetical protein glysoja_018593 [Glycine soja]
18 Hb_001454_100 0.3037769655 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
19 Hb_023301_010 0.3046175208 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
20 Hb_019863_100 0.3075326184 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_005021_010 Hb_005021_010 Hb_029920_020 Hb_029920_020 Hb_005021_010--Hb_029920_020 Hb_000258_060 Hb_000258_060 Hb_005021_010--Hb_000258_060 Hb_000217_010 Hb_000217_010 Hb_005021_010--Hb_000217_010 Hb_002205_170 Hb_002205_170 Hb_005021_010--Hb_002205_170 Hb_001486_270 Hb_001486_270 Hb_005021_010--Hb_001486_270 Hb_092233_010 Hb_092233_010 Hb_005021_010--Hb_092233_010 Hb_002320_080 Hb_002320_080 Hb_029920_020--Hb_002320_080 Hb_000260_280 Hb_000260_280 Hb_029920_020--Hb_000260_280 Hb_000192_020 Hb_000192_020 Hb_029920_020--Hb_000192_020 Hb_012753_030 Hb_012753_030 Hb_029920_020--Hb_012753_030 Hb_001454_100 Hb_001454_100 Hb_029920_020--Hb_001454_100 Hb_029920_020--Hb_001486_270 Hb_001635_010 Hb_001635_010 Hb_000258_060--Hb_001635_010 Hb_008695_220 Hb_008695_220 Hb_000258_060--Hb_008695_220 Hb_003894_020 Hb_003894_020 Hb_000258_060--Hb_003894_020 Hb_001989_100 Hb_001989_100 Hb_000258_060--Hb_001989_100 Hb_000796_020 Hb_000796_020 Hb_000258_060--Hb_000796_020 Hb_019863_100 Hb_019863_100 Hb_000258_060--Hb_019863_100 Hb_000240_100 Hb_000240_100 Hb_000217_010--Hb_000240_100 Hb_000217_010--Hb_000260_280 Hb_000217_010--Hb_000192_020 Hb_175933_010 Hb_175933_010 Hb_000217_010--Hb_175933_010 Hb_000217_010--Hb_029920_020 Hb_032972_010 Hb_032972_010 Hb_000217_010--Hb_032972_010 Hb_001195_070 Hb_001195_070 Hb_002205_170--Hb_001195_070 Hb_015941_050 Hb_015941_050 Hb_002205_170--Hb_015941_050 Hb_000175_260 Hb_000175_260 Hb_002205_170--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_002205_170--Hb_001584_240 Hb_000007_200 Hb_000007_200 Hb_002205_170--Hb_000007_200 Hb_000742_030 Hb_000742_030 Hb_002205_170--Hb_000742_030 Hb_001486_270--Hb_000260_280 Hb_002228_080 Hb_002228_080 Hb_001486_270--Hb_002228_080 Hb_001597_050 Hb_001597_050 Hb_001486_270--Hb_001597_050 Hb_001486_270--Hb_175933_010 Hb_001486_270--Hb_000192_020 Hb_000175_140 Hb_000175_140 Hb_092233_010--Hb_000175_140 Hb_000896_110 Hb_000896_110 Hb_092233_010--Hb_000896_110 Hb_000205_200 Hb_000205_200 Hb_092233_010--Hb_000205_200 Hb_033376_010 Hb_033376_010 Hb_092233_010--Hb_033376_010 Hb_000072_340 Hb_000072_340 Hb_092233_010--Hb_000072_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0316285 0 0.553744 0 0.0276757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.144052 0.28315 0.203926 0 0.113105

CAGE analysis